Alternatives and similar repositories for AD_scRNAseq_companion:

Users that are interested in AD_scRNAseq_companion are comparing it to the libraries listed below

• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆102Updated last month
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆100Updated last year
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆61Updated 3 years ago
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆39Updated 3 years ago
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆74Updated 5 years ago
• saezlab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆84Updated last year
• ggjlab / HCL
  Tools used in Human Cell Landscape(HCL)
  ☆54Updated 4 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆72Updated 4 months ago
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆93Updated 3 years ago
• quadbio / scMultiome_analysis_vignette
  Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
  ☆55Updated last year
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆64Updated 2 years ago
• data2intelligence / CytoSig
  ☆50Updated 7 months ago
• YosefLab / popV
  ☆72Updated last week
• martinjzhang / scDRS
  Single-cell disease relevance score (scDRS)
  ☆127Updated 6 months ago
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆103Updated 7 months ago
• yuyang3 / pan-B
  These are scripts for pan-cacner B cells analyses.
  ☆49Updated 9 months ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆62Updated 3 months ago
• navinlabcode / CellTrek
  ☆118Updated 3 years ago
• lanagarmire / Asgard
  ☆42Updated last year
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆124Updated 2 months ago
• mathyslab7 / ROSMAP_snRNAseq_PFC
  ☆30Updated last year
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆46Updated 3 years ago
• Lan-lab / sc-GC
  ☆30Updated 2 years ago
• jfnavarro / st_pipeline
  ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …
  ☆79Updated last month
• BostonGene / MFP
  Mollecular Functional Portraits
  ☆39Updated last year
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆79Updated last year
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆73Updated 8 months ago
• Coolgenome / iTALK
  ☆60Updated 5 years ago
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆26Updated 2 years ago
• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆45Updated 8 months ago