songw01 / AD_scRNAseq_companion
☆15Updated 2 years ago
Related projects: ⓘ
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆71Updated 4 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆81Updated 3 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆87Updated 9 months ago
- A tool for semi-automatic cell type harmonization and integration☆86Updated 8 months ago
- ☆100Updated 2 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆73Updated 11 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 2 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆55Updated 3 years ago
- Spatial transcriptomics of heart tissue☆70Updated 11 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆36Updated 3 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆62Updated 3 months ago
- ☆39Updated 8 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆110Updated 4 months ago
- ☆57Updated 5 years ago
- ☆84Updated 4 years ago
- Tools used in Human Cell Landscape(HCL)☆52Updated 4 years ago
- ☆46Updated 2 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆92Updated 2 weeks ago
- ☆56Updated last year
- Single-cell disease relevance score (scDRS)☆106Updated last month
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆112Updated 2 weeks ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆48Updated 2 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆95Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆80Updated last year
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆104Updated 11 months ago
- ☆93Updated 10 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆84Updated 2 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆119Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆90Updated 2 weeks ago
- Create stacked violin plot☆42Updated 2 years ago