pathint / reoaLinks
Relative Expression Ordering Analysis (REOA) package
☆20Updated 2 years ago
Alternatives and similar repositories for reoa
Users that are interested in reoa are comparing it to the libraries listed below
Sorting:
- ☆64Updated last year
- Unified access to several second-generation deconvolution methods☆73Updated this week
- ☆30Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- scWGCNA☆61Updated 2 years ago
- Tools used in Human Cell Landscape(HCL)☆55Updated 4 years ago
- Repository for Cibersortx☆61Updated 4 years ago
- ☆57Updated 4 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆75Updated 2 months ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆22Updated 2 years ago
- Immunology-related bioinformatics data and tools☆74Updated last year
- Bostongene cell deconvolution algorithm from RNAseq☆55Updated last year
- R package for Pathway RespOnsive GENe activity inference☆107Updated 2 years ago
- Identifying tumor cells at the single-cell level using machine learning☆48Updated 8 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 6 months ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆28Updated last year
- TENET is a tool for reconstructing gene regulatory networks from pseudo-time ordered single-cell transcriptomic data.☆40Updated 3 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆89Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆78Updated last year
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆57Updated 6 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆84Updated last month
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Using TCR and expression for sequence embedding☆57Updated 5 months ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- Whole mouse brain snATAC seq analysis☆26Updated 2 months ago
- ☆68Updated last year
- ☆47Updated 6 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆78Updated 3 years ago
- ☆82Updated last year