pathint / reoa
Relative Expression Ordering Analysis (REOA) package
☆20Updated 2 years ago
Alternatives and similar repositories for reoa:
Users that are interested in reoa are comparing it to the libraries listed below
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 11 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- ☆47Updated 4 months ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- CDSeq R Package☆20Updated 2 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 3 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Immunology-related bioinformatics data and tools☆73Updated last year
- Differential RhythmicitY analysis in R is an R package that provides the statistical framework to assess differential rhythmicity of a ti…☆14Updated last year
- scWGCNA☆60Updated 2 years ago
- Repository for Cibersortx☆58Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆30Updated 2 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆43Updated last year
- Bostongene cell deconvolution algorithm from RNAseq☆52Updated last year
- R package for the analysis of single-cell immune repertoires☆42Updated 3 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- ☆79Updated last year
- ☆27Updated 6 months ago
- ☆14Updated 3 weeks ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated 3 weeks ago
- ☆16Updated last year
- Unified access to several second-generation deconvolution methods☆71Updated this week
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆25Updated 2 years ago
- ☆59Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 7 months ago