jason-weirather / GSVA

Related projects ⓘ

Alternatives and complementary repositories for GSVA

• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆42Updated 3 years ago
• lcmmichielsen / scHPL
  ☆34Updated 6 months ago
• seasoncloud / Alleloscope
  Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…
  ☆29Updated last year
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆26Updated 11 months ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆63Updated 6 months ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆51Updated 2 years ago
• meichendong / SCDC
  SCDC
  ☆42Updated last year
• JinmiaoChenLab / ezSingleCell2
  ☆37Updated 10 months ago
• DavisLaboratory / standR
  Spatial transcriptomics analyses and decoding in R
  ☆18Updated 2 months ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆38Updated 2 years ago
• lanagarmire / SSrGE
  ☆33Updated 5 years ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆32Updated last year
• stormlovetao / eQTLQC
  ☆24Updated 4 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆55Updated 2 years ago
• crazyhottommy / pyflow-cellranger
  A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
  ☆16Updated 5 years ago
• tgac-vumc / BLADE
  BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data
  ☆26Updated 7 months ago
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆59Updated 2 years ago
• qinqian / lisa
  epigenome analysis to rank transcription factors
  ☆30Updated last year
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆49Updated last year
• lkmklsmn / MitoTrace
  ☆15Updated 5 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆38Updated 8 months ago
• McGranahanLab / TcellExTRECT
  ☆46Updated last year
• cellatlas / human
  ☆40Updated 3 weeks ago
• UPSUTER / GEMLI
  ☆27Updated 3 months ago
• sqjin / CellChatShiny
  Standalone shiny server container for viewing CellChat object
  ☆12Updated 3 years ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆36Updated 2 weeks ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆41Updated 9 months ago
• jdekanter / CHETAH
  scRNA-seq cell type identification
  ☆41Updated 5 years ago
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆47Updated 2 weeks ago
• kkang7 / CDSeq_R_Package
  CDSeq R Package
  ☆17Updated last year