Alternatives and similar repositories for GSVA:

Users that are interested in GSVA are comparing it to the libraries listed below

• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆28Updated last year
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated 7 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆39Updated 10 months ago
• yjzhang / split-seq-pipeline
  ☆20Updated 4 years ago
• JinmiaoChenLab / ezSingleCell2
  ☆52Updated last year
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 3 years ago
• UPSUTER / GEMLI
  ☆29Updated 4 months ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆38Updated 2 years ago
• seasoncloud / Alleloscope
  Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…
  ☆29Updated last year
• lcmmichielsen / scHPL
  ☆34Updated 8 months ago
• jbergenstrahle / STUtility
  ☆47Updated last year
• DavisLaboratory / standR
  Spatial transcriptomics analyses and decoding in R
  ☆18Updated last month
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆23Updated 7 months ago
• crazyhottommy / pyflow-cellranger
  A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
  ☆16Updated 5 years ago
• wenweixiong / MARVEL
  ☆45Updated 5 months ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 2 months ago
• cbg-ethz / SCICoNE
  Single-cell copy number calling and event history reconstruction.
  ☆20Updated 3 weeks ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆39Updated last week
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆43Updated last year
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆36Updated 3 months ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆33Updated last year
• liulab-dfci / lisa2
  ☆29Updated 2 years ago
• ambrosejcarr / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆30Updated 5 years ago
• stormlovetao / eQTLQC
  ☆25Updated 4 years ago
• sqjin / CellChatShiny
  Standalone shiny server container for viewing CellChat object
  ☆12Updated 3 years ago
• rajewsky-lab / spacemake
  ☆39Updated last month
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 5 years ago
• gxiaolab / scAllele
  ☆31Updated 8 months ago
• lanagarmire / SSrGE
  ☆33Updated 5 years ago
• McGranahanLab / TcellExTRECT
  ☆46Updated last week