Alternatives and similar repositories for minfi

Users that are interested in minfi are comparing it to the libraries listed below

• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆106Updated 2 years ago
• BIMSBbioinfo / genomation
  R package for genomic feature analysis and visualization
  ☆79Updated 5 months ago
• kdkorthauer / dmrseq
  R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
  ☆61Updated 4 months ago
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆46Updated this week
• sa-lee / superintronic
  A tidy interface for coverage analysis
  ☆30Updated 5 years ago
• bioinformatics-core-shared-training / ngs-in-bioc
  A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor
  ☆43Updated 9 years ago
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆33Updated 2 months ago
• kevinblighe / CorLevelPlot
  Visualise correlation results and test significancies of these
  ☆23Updated 5 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated 11 months ago
• lawremi / ggbio
  Grid and ggplot2 based visualization for biological data
  ☆115Updated last month
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆82Updated last month
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆72Updated last month
• thelovelab / rnaseqGene
  RNA-seq workflow: exploratory analysis and differential expression
  ☆79Updated last year
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆55Updated 2 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆59Updated 10 months ago
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated 2 years ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆43Updated 6 months ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated last week
• joepickrell / fgwas
  Functional genomics and genome-wide association studies
  ☆67Updated 7 years ago
• crazyhottommy / DNA-methylation-analysis
  DNA methylation analysis notes from Ming Tang
  ☆87Updated 5 years ago
• ConesaLab / MultiPower
  Statistical power studies for multi-omics experiments.
  ☆32Updated 8 months ago
• sirselim / illumina450k_filtering
  A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
  ☆30Updated last year
• waldronlab / enrichOmics
  Functional enrichment analysis of high-throughput omics data
  ☆20Updated 8 months ago
• saketkc / rna-seq-snakemake
  Snakemake based pipeline for RNA-Seq analysis
  ☆31Updated 6 years ago
• mxxdxxx / FirebrowseR
  An R client for broads firehose pipeline, providing TCGA data sets
  ☆61Updated 6 years ago
• mikelove / deseq2_or_edger
  DESeq2 or edgeR
  ☆22Updated 8 years ago
• brentp / combined-pvalues
  combining p-values using modified stouffer-liptak for spatially correlated results (probes)
  ☆46Updated 3 years ago
• PeeperLab / Rtoolbox
  Toolbox with R scripts
  ☆38Updated 6 years ago