Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
☆23Dec 12, 2018Updated 7 years ago
Alternatives and similar repositories for rtfbs_db
Users that are interested in rtfbs_db are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detecting Regulatory Elements using GRO-seq and PRO-seq☆42Apr 30, 2025Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆36Updated this week
- Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by…☆20Oct 5, 2017Updated 9 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Aug 8, 2025Updated last year
- Color DNA/RNA bases in terminal output☆22Aug 29, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Oct 15, 2025Updated 11 months ago
- Decomposition-based peak identification, which find peaks across a large number of TSS (transcription starting site) profiles☆15Aug 3, 2017Updated 9 years ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 8 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆53Nov 5, 2022Updated 3 years ago
- ☆21Mar 20, 2017Updated 9 years ago
- ☆23Apr 16, 2016Updated 10 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆49Jun 21, 2022Updated 4 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆89Apr 21, 2025Updated last year
- R interface to query UCSC bigWig files☆14Aug 23, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- TFFM framework