Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
☆23Dec 12, 2018Updated 7 years ago
Alternatives and similar repositories for rtfbs_db
Users that are interested in rtfbs_db are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detecting Regulatory Elements using GRO-seq and PRO-seq☆42Apr 30, 2025Updated last year
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago
- Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by…☆20Oct 5, 2017Updated 9 years ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Jun 11, 2020Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆36Oct 7, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Toolkit for QTL mapping and meta-analysis.☆17May 24, 2022Updated 4 years ago
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆13Sep 25, 2017Updated 9 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Aug 8, 2025Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆89Apr 21, 2025Updated last year
- Yet Another Motif Discovery Algorithm☆53Jan 10, 2019Updated 7 years ago
- The R package for SVM with GPU architecture based on the GTSVM software☆32Aug 4, 2021Updated 5 years ago
- PubMed Watcher - Tailored biomedical literature feed☆11Sep 18, 2013Updated 13 years ago
- Decomposition-based peak identification, which find peaks across a large number of TSS (transcription starting site) profiles☆15Aug 3, 2017Updated 9 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Oct 15, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Color DNA/RNA bases in terminal output☆22Aug 29, 2017Updated 9 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆53Nov 5, 2022Updated 3 years ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 8 years ago
- ☆23Apr 16, 2016Updated 10 years ago
- Scripts for analyzing ATAC-STARR data.☆10Feb 5, 2024Updated 2 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- ☆21Mar 20, 2017Updated 9 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆49Jun 21, 2022Updated 4 years ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Jul 29, 2020Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Python module for the easy handling and analysis of DNase-seq data☆38Jul 18, 2019Updated 7 years ago
- ☆53Mar 22, 2026Updated 7 months ago
- R package for high-throughput DNA shape predictions and feature encoding☆20Jul 1, 2021Updated 5 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Mar 12, 2020Updated 6 years ago
- Identifying transcription factor binding sites from neural network contribution scores☆28Aug 26, 2026Updated 2 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 5 years ago
- Spectral learning for Annotating Chromatin Labels and Epigenomes☆12Dec 15, 2015Updated 10 years ago
- ☆13Aug 30, 2025Updated last year
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆16Jun 19, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R interface to query UCSC bigWig files☆14Aug 23, 2020Updated 6 years ago
- Single cell network synthesis toolkit☆23Feb 15, 2021Updated 5 years ago
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- Interval data structure☆235Mar 18, 2026Updated 7 months ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆18May 10, 2026Updated 5 months ago
- Links to data science, bioinformatics, statistics, and machine learning resources☆18Aug 20, 2020Updated 6 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 7 years ago