Danko-Lab / rtfbs_dbLinks
Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
☆23Updated 7 years ago
Alternatives and similar repositories for rtfbs_db
Users that are interested in rtfbs_db are comparing it to the libraries listed below
Sorting:
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 7 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Updated 4 months ago
- Tools for visualizing genomics data☆69Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated 2 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated 3 weeks ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated 2 years ago
- combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆46Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 9 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆32Updated 9 months ago