soedinglab / uniclust-pipeline

Related projects ⓘ

Alternatives and complementary repositories for uniclust-pipeline

• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆61Updated 7 years ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆47Updated last year
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆48Updated 3 months ago
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆55Updated 2 years ago
• realbigws / RaptorX_Property_Fast
  RaptorX-Property: a Standalone Package for Protein Structure Property Prediction
  ☆15Updated 5 years ago
• sokrypton / map_align
  Contact map alignment
  ☆39Updated 3 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆56Updated 3 years ago
• pagnani / PlmDCA.jl
  Pseudo Likelihood Maximization for protein in Julia
  ☆50Updated last year
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆32Updated 11 months ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆51Updated this week
• beckham-lab / EpHod
  Deep learning prediction of enzyme optimum pH
  ☆23Updated 11 months ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆24Updated last year
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆40Updated 8 months ago
• cmbi / dssp
  The DSSP building software
  ☆37Updated last year
• fhalab / SPGen
  ☆18Updated 3 years ago
• graik / biskit
  A Python platform for Structural Bioinformatics
  ☆54Updated 9 months ago
• largelymfs / deepcontact
  DeepContact Software
  ☆26Updated 6 years ago
• normandavey / AlphaFold2-IDR-complex-prediction
  ☆37Updated 3 years ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆49Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆83Updated last year
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆30Updated 2 years ago
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆18Updated 3 months ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆54Updated last year
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆92Updated this week
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆78Updated 8 months ago
• tristanic / pae_to_domains
  Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
  ☆32Updated 2 years ago
• JudeWells / chainsaw
  ☆29Updated last month
• greener-group / progres
  Fast protein structure searching or your money back
  ☆81Updated 2 months ago
• kad-ecoli / BeEM
  Conversion of PDBx/mmCIF files to best effort/minimal PDB files
  ☆16Updated 3 weeks ago