Alternatives and similar repositories for uniclust-pipeline

Users that are interested in uniclust-pipeline are comparing it to the libraries listed below

• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆66Updated 7 years ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆45Updated 3 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆93Updated last year
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆55Updated 3 months ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆53Updated 6 months ago
• normandavey / AlphaFold2-IDR-complex-prediction
  ☆40Updated 3 years ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆87Updated this week
• greener-group / progres
  Fast protein structure searching or your money back
  ☆108Updated 3 months ago
• TattaBio / gLM2
  ☆70Updated 9 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆57Updated 2 weeks ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆50Updated 2 months ago
• realbigws / RaptorX_Property_Fast
  RaptorX-Property: a Standalone Package for Protein Structure Property Prediction
  ☆17Updated 6 years ago
• JudeWells / chainsaw
  ☆41Updated 9 months ago
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆37Updated 5 months ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆57Updated this week
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆61Updated 4 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆89Updated last year
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆37Updated 2 years ago
• sokrypton / map_align
  Contact map alignment
  ☆41Updated 4 years ago
• jbloomlab / SARS-CoV-2-RBD_DMS
  Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike
  ☆45Updated 3 years ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆73Updated 7 months ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆99Updated 3 months ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆21Updated last month
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆38Updated last year
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆58Updated 3 years ago
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆101Updated 2 months ago
• graik / biskit
  A Python platform for Structural Bioinformatics
  ☆57Updated 3 months ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆46Updated 5 years ago