Augmented Interval Tree implemented in Cython/C
☆20Jan 17, 2025Updated last year
Alternatives and similar repositories for ailist
Users that are interested in ailist are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Augmented interval list (AIList): a novel data structure for efficient genomic interval search☆23Aug 29, 2022Updated 3 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 2 months ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- Implicit Interval Tree with Interpolation Index☆42Jul 13, 2022Updated 3 years ago
- A C library for handling bigWig files☆81Jan 17, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Optimized sequence graph implementations for graph genomics☆35Updated this week
- ☆15Jun 29, 2021Updated 4 years ago
- stageR package☆13Feb 28, 2023Updated 3 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 3, 2022Updated 3 years ago
- horizontal pileup☆16Nov 11, 2022Updated 3 years ago
- A file watcher written in Rust☆11Dec 1, 2024Updated last year
- Bedfile perturbation tool☆17Mar 6, 2026Updated last month
- A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)☆170May 28, 2024Updated last year
- NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.☆223Jul 4, 2025Updated 9 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 5 years ago
- a cythonized, extended version of the interval search tree in bx☆30Jun 4, 2019Updated 6 years ago
- Just a python fasta/q parser based on kseq.h☆14Jul 13, 2020Updated 5 years ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- A Brand New LSH: The fly’s olfactory circuits algorithm☆11May 2, 2018Updated 7 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 2 weeks ago
- A simple Partial Order Aligner based on Lee, Grasso and Sharlow (2002), for education/demonstration purposes☆75Jun 20, 2024Updated last year
- A very fast interval tree data structure☆131Feb 3, 2025Updated last year
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Aug 25, 2017Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated 11 months ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- Annotate non-coding regulatory vars using our GREEN-DB, prediction scores, conservation and pop AF☆20Jun 13, 2025Updated 9 months ago
- Local alignment search with k-bounded matching statistics.☆21Aug 19, 2025Updated 7 months ago
- Go / Golang Bioinformatics Library☆45Oct 13, 2024Updated last year
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Demonstrating best practices for bioinformatics command line tools☆24Jul 23, 2020Updated 5 years ago
- Nim Red/Black Trees☆23Sep 30, 2023Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- A modular, containerized pipeline for PRO-seq data processing☆11Mar 6, 2026Updated last month
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Nov 19, 2024Updated last year
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 7 months ago