kylessmith / ailistLinks
Augmented Interval Tree implemented in Cython/C
☆20Updated 10 months ago
Alternatives and similar repositories for ailist
Users that are interested in ailist are comparing it to the libraries listed below
Sorting:
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated last year
- Implicit Interval Tree with Interpolation Index☆41Updated 3 years ago
- fast, pure-python interval overlap testing☆52Updated 5 years ago
- ziglang + htslib☆20Updated 4 years ago
- VCF Zarr Specification☆15Updated 6 months ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Updated 5 years ago
- Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…☆23Updated 6 months ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 8 years ago
- horizontal pileup☆16Updated 3 years ago
- The python binding for D4 format☆16Updated 4 years ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated last year
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Updated 8 years ago
- a cythonized, extended version of the interval search tree in bx☆30Updated 6 years ago
- A lightweight Python graphing API for genomic features☆15Updated 3 years ago
- Monitor computational workflows in real time☆73Updated last year
- SQL support plugin for Nextflow☆32Updated 2 months ago
- drunk on perbase pileups and lua expressions☆19Updated last week
- WDL plugin for pytest☆48Updated 2 years ago
- Write-once-read-many table for large datasets.☆27Updated 2 years ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆23Updated 2 months ago
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Updated 2 years ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated 2 weeks ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 3 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated 4 months ago
- Augmented interval list (AIList): a novel data structure for efficient genomic interval search☆23Updated 3 years ago
- pyranges/bioframe for polars☆18Updated 2 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆82Updated last year
- Open compressed files in Python☆80Updated last month