Alternatives and similar repositories for ailist

Users that are interested in ailist are comparing it to the libraries listed below

• johanneskoester / alpaca
  ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…
  ☆23Updated 10 months ago
• lh3 / klib.nim
  Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang
  ☆31Updated 5 years ago
• brentp / quicksect
  a cythonized, extended version of the interval search tree in bx
  ☆30Updated 6 years ago
• mlin / iitii
  Implicit Interval Tree with Interpolation Index
  ☆41Updated 3 years ago
• databio / AIList
  Augmented interval list (AIList): a novel data structure for efficient genomic interval search
  ☆23Updated 3 years ago
• CoreArray / PySeqArray
  PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)
  ☆14Updated 8 years ago
• yhoogstrate / fastafs
  toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
  ☆22Updated last year
• brentp / python-giggle
  python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
  ☆16Updated 7 years ago
• sgkit-dev / vcf-zarr-spec
  VCF Zarr Specification
  ☆15Updated 4 months ago
• brentp / hileup
  horizontal pileup
  ☆16Updated 2 years ago
• 38 / pyd4
  The python binding for D4 format
  ☆16Updated 3 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated 2 years ago
• brentp / spacepile
  convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
  ☆14Updated 2 years ago
• medvedevgroup / varmatch
  robust matching of small variant datasets using flexible scoring schemes
  ☆11Updated 5 years ago
• brentp / hts-zig
  ziglang + htslib
  ☆20Updated 3 years ago
• pyranges / ruranges
  Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library
  ☆13Updated last week
• endrebak / poranges
  pyranges/bioframe for polars
  ☆18Updated 2 years ago
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated 2 months ago
• fulcrumgenomics / fgpyo
  Quality of life improvements for Bioinformatics in Python.
  ☆30Updated this week
• brentp / interlap
  fast, pure-python interval overlap testing
  ☆52Updated 4 years ago
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆25Updated this week
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated last month
• dnanexus / IndexTools
  IndexTools is a toolkit for extremely fast NGS analysis based on index files.
  ☆17Updated 3 years ago
• brentp / hts-python
  pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
  ☆49Updated 8 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• danielecook / seq-collection
  ☆14Updated 5 years ago
• epruesse / ymp
  Flexible omics pipeline
  ☆17Updated 4 months ago
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆63Updated 3 years ago
• jdidion / xphyle
  Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…
  ☆23Updated 4 months ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆32Updated this week