seandavi / GFFutilsLinks
Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach
☆36Updated 14 years ago
Alternatives and similar repositories for GFFutils
Users that are interested in GFFutils are comparing it to the libraries listed below
Sorting:
- Please consider using/contributing to https://github.com/nf-core/sarek☆40Updated 4 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- sort genomic data☆36Updated 5 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆31Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Adapters for trimming☆30Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 11 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Tools for bam file processing☆55Updated 10 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆33Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago