YeoLab / MINESLinks
(m)6A (I)dentification Using (N)anopor(E) (S)equencing
☆19Updated 5 years ago
Alternatives and similar repositories for MINES
Users that are interested in MINES are comparing it to the libraries listed below
Sorting:
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- ☆24Updated 3 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 5 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Updated 5 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 3 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Updated 3 years ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Set of tools to manipulate and visualize modified base bam files☆59Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆28Updated 2 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Updated last year
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆119Updated 7 months ago
- ☆52Updated 4 months ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆15Updated last month
- Somatic structural variant caller for long-read data☆87Updated 2 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆49Updated 2 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆71Updated 2 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Updated 3 weeks ago
- ☆30Updated 5 years ago
- The Flexible Demultiplexer☆39Updated 3 weeks ago
- Updated and optimized fork of BSMAP☆23Updated 5 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 7 months ago
- ☆32Updated 4 months ago