Web based Image Viewer developed @ Center for Advanced Imaging [University of Queensland]
☆19May 18, 2023Updated 2 years ago
Alternatives and similar repositories for TissueStack
Users that are interested in TissueStack are comparing it to the libraries listed below
Sorting:
- UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images☆13Feb 18, 2026Updated last week
- A flexible Python-based GUI for stereotaxic experiment planning.☆11Feb 4, 2026Updated 3 weeks ago
- Brain flatmaps generation☆11Oct 5, 2022Updated 3 years ago
- Anatomical space conventions made easy.☆12Feb 20, 2026Updated last week
- Image processing tool focusing on biological applications☆14Jul 18, 2025Updated 7 months ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Oct 22, 2024Updated last year
- ☆14Jan 25, 2024Updated 2 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Feb 26, 2021Updated 5 years ago
- FreiPose: A Deep Learning Framework for Precise Animal Motion Capture in 3D Spaces☆18Apr 11, 2022Updated 3 years ago
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆27Updated this week
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Mar 20, 2025Updated 11 months ago
- StarDist plugin for napari☆38Aug 24, 2024Updated last year
- Space for discussion of a standardized structure (directory layout + metadata) for experimental data in systems neuroscience, similar to …☆23Apr 24, 2023Updated 2 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 9 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆29Feb 16, 2026Updated last week
- Spike sorting benchmarking system☆32Sep 9, 2024Updated last year
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Nov 21, 2024Updated last year
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Jul 4, 2022Updated 3 years ago
- A python and C++ library for reading and writing neuronal morphologies☆28Feb 26, 2025Updated last year
- Browser-based NWB visualization and DANDI exploration☆63Feb 2, 2026Updated 3 weeks ago
- ☆29Oct 22, 2025Updated 4 months ago
- SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.☆27Oct 11, 2024Updated last year
- 3D shape analysis using deep learning☆29Oct 8, 2025Updated 4 months ago
- code for storing neurodata images and image annotations☆37Oct 1, 2017Updated 8 years ago
- Lattice light-sheet post-processing utility.☆30Feb 2, 2026Updated 3 weeks ago
- ☆33May 2, 2025Updated 9 months ago
- The GUI Hex Editor/Analyzer supports remote access and template. Which works on Winodws/Linux☆16Feb 9, 2023Updated 3 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆38Nov 1, 2022Updated 3 years ago
- Image segmentation with a Markov random field☆23Apr 7, 2019Updated 6 years ago
- A tool for drawing ROIs on videos and analysing deeplabcut videos.☆35Feb 7, 2021Updated 5 years ago
- Practical Machine Learning - McGill University☆12Feb 20, 2019Updated 7 years ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Feb 4, 2026Updated 3 weeks ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Nov 24, 2023Updated 2 years ago
- Deep learning-driven multi animal tracking and pose estimation add-on for Blender☆39Apr 23, 2025Updated 10 months ago
- An R toolbox for analysing movement across space and time☆10Jan 16, 2026Updated last month
- DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.☆13Updated this week
- Deep learning for animal action recognition toolbox☆35Sep 18, 2025Updated 5 months ago