Alternatives and similar repositories for TissueStack

Users that are interested in TissueStack are comparing it to the libraries listed below

• int-brain-lab / atlas
  Brain flatmaps generation
  ☆11Updated 2 years ago
• ClearVolume / PyClearVolume
  python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.
  ☆15Updated 8 years ago
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆24Updated this week
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆53Updated this week
• ntustison / ANTsXMouseBrainMapping
  The ANTsX Ecosystem for Mapping the Mouse Brain
  ☆14Updated 2 weeks ago
• dipy / cudipy
  cupy-accelerated DIPY
  ☆10Updated 4 years ago
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated last month
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆39Updated last year
• neuroscales / nifti-zarr
  A draft specification for the nifti-zarr format
  ☆16Updated 5 months ago
• takashi310 / VVD_Viewer
  ☆20Updated 2 years ago
• clij / clij-docs
  Online documentation and reference for CLIJ
  ☆28Updated 4 years ago
• apeer-micro / apeer-ometiff-library
  Easily read and write ome-tiff images in python
  ☆27Updated last year
• DylanMuir / ReadImageJROI
  Matlab function to import ROIs from ImageJ
  ☆27Updated 5 years ago
• ome / ome2024-ngff-challenge
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
  ☆20Updated 3 months ago
• dtward / image_lddmm_tensorflow
  Image mapping using the LDDMM algorithm, implemented in tensorflow
  ☆16Updated 4 years ago
• maweigert / spimagine
  GPU accelerated volume rendering / processing in Python
  ☆119Updated 6 years ago
• SCIInstitute / fluorender
  FluoRender is an interactive tool for fluorescence microscopy data visualization and analysis
  ☆45Updated this week
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆80Updated 7 years ago
• saalfeldlab / n5-viewer
  BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.
  ☆19Updated 2 weeks ago
• allen-cell-animated / agave
  ☆50Updated this week
• almarklein / pirt
  Python Image Registration Toolkit
  ☆24Updated 7 months ago
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆55Updated 2 months ago
• alisterburt / napari-workshops
  A JupyterBook site for napari workshop materials
  ☆11Updated 3 years ago
• BIC-MNI / libminc
  libminc is the core library and API of the MINC toolkit
  ☆19Updated 6 months ago
• AllenCell / napari-allencell-segmenter
  A plugin that enables image segmentation provided by Allen Institute for Cell Science
  ☆17Updated last year
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 6 months ago
• abria / TeraStitcher
  A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
  ☆88Updated last year
• SWC-Advanced-Microscopy / StitchIt
  Stitching of large tiled datasets
  ☆21Updated 5 months ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆18Updated this week