Alternatives and similar repositories for Tax4Fun2_short_tutorial:

Users that are interested in Tax4Fun2_short_tutorial are comparing it to the libraries listed below

• marbits-icm / marbits-public
  ☆16Updated last month
• DaliangNing / iCAMP1
  Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
  ☆74Updated 2 months ago
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆128Updated this week
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆154Updated 2 years ago
• qichao1984 / NCyc
  ☆48Updated 4 years ago
• colinbrislawn / unite-train
  🍄 Qiime2 ITS classifiers for the UNITE database
  ☆37Updated last month
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆30Updated 9 months ago
• UMNFuN / FUNGuild
  FUNGuild: parsing OTUs into functional guilds
  ☆117Updated 11 months ago
• anw-sh / silva-138_classifiers
  Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes
  ☆13Updated 9 months ago
• stegen / Stegen_etal_ISME_2013
  Code for running analyses carried out in Stegen et al. 2013, ISME
  ☆29Updated 7 years ago
• pr2database / pr2database
  Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
  ☆80Updated 2 weeks ago
• fjossandon / Tax4Fun2
  ☆15Updated 2 years ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆65Updated last year
• Saskia-Oosterbroek / decona
  fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads
  ☆47Updated 8 months ago
• biofuture / Ublastx_stageone
  This is the source code for multisamples ARGs profiling using SARG2.0 database
  ☆46Updated 4 years ago
• Zymo-Research / figaro
  An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
  ☆87Updated 9 months ago
• danknights / sourcetracker
  ☆73Updated last year
• RiceMicrobiome / Edwards-et-al.-2014
  ☆14Updated 10 years ago
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆70Updated 2 years ago
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆204Updated last month
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆106Updated last month
• picrust / picrust
  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…
  ☆89Updated 2 years ago
• xinehc / args_oap
  ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…
  ☆53Updated last month
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆62Updated last year
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆72Updated 2 years ago
• cozygene / FEAST
  Fast expectation maximization for microbial source tracking
  ☆122Updated 11 months ago
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆88Updated 8 months ago
• SchlossLab / MiSeq_WetLab_SOP
  ☆59Updated 5 years ago
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆75Updated 2 months ago
• mgoeker / table2itol
  Generating iToL annotations from Spreadsheet or CSV files
  ☆100Updated 4 years ago