songweizhi / Tax4Fun2_short_tutorial
A short tutorial for Tax4Fun2
☆15Updated 6 months ago
Alternatives and similar repositories for Tax4Fun2_short_tutorial:
Users that are interested in Tax4Fun2_short_tutorial are comparing it to the libraries listed below
- Make Picrust2 Output Analysis and Visualization Easier☆124Updated last month
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆74Updated last month
- FUNGuild: parsing OTUs into functional guilds☆112Updated 10 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆63Updated last year
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆29Updated 8 months ago
- ☆71Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆153Updated last year
- Statistics and visualization for amplicon data☆71Updated last year
- ☆13Updated 2 years ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆90Updated 2 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆29Updated 7 years ago
- ☆14Updated 10 years ago
- Microbial ecological network visualization clustering☆103Updated 2 weeks ago
- ☆49Updated 4 years ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆36Updated this week
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆87Updated 8 months ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 8 years ago
- ☆15Updated last week
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆80Updated last year
- Various functions for analysis of microbial community data☆43Updated 2 years ago
- Metatranscriptomics Tutorial☆62Updated last year
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆113Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆43Updated 4 months ago
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆13Updated 8 months ago
- ☆85Updated 9 months ago
- Network construction, analysis, and comparison for microbial compositional data☆163Updated last week
- ☆14Updated 3 weeks ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆71Updated 2 years ago
- Using ggtree to build phylogenetic trees☆46Updated 4 months ago