ParkinsonLab / Metatranscriptome-WorkshopLinks
Metatranscriptomics Tutorial
☆62Updated last year
Alternatives and similar repositories for Metatranscriptome-Workshop
Users that are interested in Metatranscriptome-Workshop are comparing it to the libraries listed below
Sorting:
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated last year
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆76Updated 3 months ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆47Updated 4 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆54Updated 3 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Updated 4 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆32Updated 2 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆103Updated 5 years ago
- Development version of Easyfig☆96Updated last year
- OPERA-MS - Hybrid Metagenomic Assembler☆95Updated 11 months ago
- Course material for the metagenomics course☆44Updated 3 years ago
- A pipeline for nanopore long-read metagenomic analysis.☆37Updated last week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆95Updated last month
- Horizontal gene transfer (HGT) identification pipeline☆58Updated 2 years ago
- Metagenome analysis pipeline☆98Updated 3 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆72Updated 5 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆46Updated 3 years ago
- ☆82Updated last year
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆119Updated last year
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆54Updated 2 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆68Updated 4 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- ☆49Updated 4 years ago
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆70Updated 9 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- 🍄 Qiime2 ITS classifiers for the UNITE database☆39Updated 2 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆115Updated 3 months ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆46Updated 2 months ago