ParkinsonLab / Metatranscriptome-WorkshopLinks
Metatranscriptomics Tutorial
☆66Updated 2 years ago
Alternatives and similar repositories for Metatranscriptome-Workshop
Users that are interested in Metatranscriptome-Workshop are comparing it to the libraries listed below
Sorting:
- Generating iToL annotations from Spreadsheet or CSV files☆108Updated 5 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆92Updated 7 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆61Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆143Updated 2 years ago
- Development version of Easyfig☆104Updated 2 years ago
- Course material for the metagenomics course☆47Updated 3 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆81Updated 2 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Rapid and scalable correlation estimation for compositional data☆97Updated last year
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆129Updated 3 months ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆96Updated last year
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆86Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆169Updated 5 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆67Updated 2 years ago
- Horizontal gene transfer (HGT) identification pipeline☆67Updated 2 years ago
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆18Updated last year
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆120Updated 2 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆168Updated last month
- Metagenome analysis pipeline☆100Updated 4 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆125Updated 2 weeks ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 8 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆47Updated this week
- Making whole bacterial genome sequencing data analysis easy☆113Updated 9 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆158Updated 7 months ago
- Processing pipeline for pan-genome visulization and exploration☆143Updated 2 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆99Updated last year
- BSR-Based Allele Calling Algorithm☆148Updated last week