ParkinsonLab / Metatranscriptome-Workshop
Metatranscriptomics Tutorial
☆55Updated last year
Related projects ⓘ
Alternatives and complementary repositories for Metatranscriptome-Workshop
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated 7 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆26Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆47Updated 2 years ago
- Course material for the metagenomics course☆43Updated 2 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆110Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆45Updated 3 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆63Updated 11 months ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆99Updated 10 months ago
- Development version of Easyfig☆90Updated 11 months ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆57Updated 3 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆70Updated last year
- Generating iToL annotations from Spreadsheet or CSV files☆96Updated 4 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆109Updated 6 months ago
- Statistical analysis for sparse high-throughput sequencing☆67Updated 8 months ago
- Metagenomic classification of long-read sequencing data☆61Updated this week
- ☆79Updated last year
- A toolbox for comparative genomics.☆97Updated 3 years ago
- DDBJ Fast Annotation and Submission Tool☆78Updated last month
- ☆27Updated 10 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆27Updated 4 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆103Updated this week
- Metagenome analysis pipeline☆91Updated 3 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆43Updated 8 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆68Updated 4 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 8 years ago
- Horizontal gene transfer (HGT) identification pipeline☆56Updated last year
- ☆47Updated 3 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆147Updated last year
- ☆54Updated 8 months ago