ParkinsonLab / Metatranscriptome-WorkshopLinks
Metatranscriptomics Tutorial
☆63Updated 2 years ago
Alternatives and similar repositories for Metatranscriptome-Workshop
Users that are interested in Metatranscriptome-Workshop are comparing it to the libraries listed below
Sorting:
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆82Updated last month
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆136Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆47Updated 4 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆103Updated 5 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago
- Development version of Easyfig☆100Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆63Updated 4 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆117Updated 2 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated last year
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆16Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 2 months ago
- Course material for the metagenomics course☆44Updated 3 years ago
- Statistical Analysis of Metagenomic Profiles☆94Updated 5 years ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆44Updated 3 weeks ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆162Updated 2 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆97Updated last year
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆117Updated 4 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆35Updated 2 years ago
- Rapid and scalable correlation estimation for compositional data☆93Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- ☆143Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- Metagenome analysis pipeline☆99Updated 4 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆121Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆98Updated 4 months ago
- BSR-Based Allele Calling Algorithm☆149Updated 3 weeks ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆91Updated last year