Parallel k-mer indexing for biological sequences
☆12Dec 14, 2018Updated 7 years ago
Alternatives and similar repositories for kmerind
Users that are interested in kmerind are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Computes graph connectivity for large graphs☆11Jan 30, 2017Updated 9 years ago
- C++11 Message Passing☆74Apr 13, 2022Updated 3 years ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Nov 3, 2017Updated 8 years ago
- aCcelerated Alignment-FrEe sequence analysis☆13May 8, 2018Updated 7 years ago
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆18Oct 3, 2016Updated 9 years ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 5 years ago
- ☆13Nov 20, 2015Updated 10 years ago
- utilities for indexing and sequence extraction from FASTA files☆59May 15, 2021Updated 4 years ago
- PgRC: Pseudogenome based Read Compressor☆14Nov 20, 2024Updated last year
- A simulator for horizontal gene transfer (HGT) in microbial communities☆10Oct 5, 2020Updated 5 years ago
- K-mer Counting for Biological Sequence Analysis☆28Jan 23, 2026Updated 2 months ago
- genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorph…☆16Mar 3, 2022Updated 4 years ago
- ☆24Jan 25, 2024Updated 2 years ago
- km : a software for RNA-seq investigation using k-mer decomposition☆10Apr 8, 2025Updated 11 months ago
- Accompanying scripts and material to conduct a temporal EFA on ERP data as explained in Scharf, Widmann, Bonmassar & Wetzel (2021). Pleas…☆10Aug 5, 2022Updated 3 years ago
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- ☆14Aug 9, 2016Updated 9 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Python routines for generating simple models of DNA☆13Oct 19, 2025Updated 5 months ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- Multifractal analysis in Matlab and Python☆10Mar 25, 2020Updated 5 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- 用于USTC 教务系统的一些小工具 (Not Maintained)☆15Mar 15, 2015Updated 11 years ago
- Recursive Neural Networks implemented with Tensorflow☆13Nov 5, 2019Updated 6 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- Various automated MATLAB pipelines for preprocessing EEG☆13Feb 25, 2020Updated 6 years ago
- Parallel Lightweight Suffix Array Algorithm.☆19Dec 28, 2016Updated 9 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Feb 3, 2021Updated 5 years ago
- A Parallel Framework for Bayesian Learning☆14Aug 2, 2021Updated 4 years ago
- ☆28Aug 24, 2014Updated 11 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Feb 23, 2023Updated 3 years ago
- Recreation of the DNA Sequence Classification Paper☆12Oct 27, 2016Updated 9 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- NOCAD - Network based Observability and Controlability Analysis of Dynamical Systems toolbox for MATLAB and Octave☆13Jul 15, 2019Updated 6 years ago
- Confidence In Network Meta-Analysis☆14Jun 24, 2021Updated 4 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆68Sep 10, 2014Updated 11 years ago
- A fast, user-friendly analysis and evaluation toolkit for some DNA sequence classification tasks☆15Sep 22, 2018Updated 7 years ago
- Material related to "Unmixing oscillatory brain activity by EEG source localization and empirical mode decomposition". Implementation of …☆15Jan 25, 2019Updated 7 years ago