Alternatives and similar repositories for caretta:

Users that are interested in caretta are comparing it to the libraries listed below

• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆14Updated last month
• JudeWells / chainsaw
  ☆32Updated 5 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆37Updated 8 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆33Updated last month
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆31Updated last year
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆24Updated last year
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆34Updated 3 years ago
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated last year
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆34Updated last year
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆49Updated last month
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆35Updated 2 years ago
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆19Updated 2 weeks ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆23Updated last year
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆43Updated 5 months ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆48Updated 2 months ago
• clairemcwhite / vcmsa
  ☆29Updated last year
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆33Updated this week
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated last year
• esbgkannan / kibby
  A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
  ☆16Updated 2 years ago
• ShintaroMinami / mican
  Non-sequential structural alignment program for protein structure
  ☆19Updated 4 months ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆37Updated last year
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆42Updated 2 months ago
• UCLOrengoGroup / cath-alphaflow
  ☆19Updated 3 months ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆19Updated 4 months ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 5 years ago
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆32Updated last year