Alternatives and similar repositories for PIONEER:

Users that are interested in PIONEER are comparing it to the libraries listed below

• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆36Updated this week
• pgmikhael / protgps
  ☆75Updated last month
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆83Updated last year
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆50Updated 6 months ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆36Updated 7 months ago
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆18Updated 10 months ago
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆26Updated last week
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆104Updated 8 months ago
• tymor22 / tm-vec
  ☆67Updated 7 months ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆68Updated 2 years ago
• SNU-CSSB / RF2-Lite
  ☆27Updated 11 months ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆37Updated last year
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆52Updated last year
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆35Updated 7 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆58Updated 4 years ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆47Updated 6 months ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆72Updated 2 weeks ago
• Doudna-lab / GARNET_DL
  ☆36Updated 3 months ago
• piercelab / tcrmodel2
  ☆40Updated last month
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated last month
• gzBiomedical / EpiScan
  Antibody-Specific Epitope Mapping
  ☆12Updated 5 months ago
• JiangBioLab / DLpTCR
  Predicting immunogenic peptide recognized by TCR through ensemble deep learning
  ☆15Updated last year
• psp3dcg / LightRoseTTA
  The official pytorch implementation of "LightRoseTTA: High-efficient and Accurate Protein Structure Prediction Using an Ultra-Lightweight…
  ☆15Updated 3 weeks ago
• ShenLab / gMVP
  ☆21Updated 2 years ago
• YAndrewL / CLAPE
  contrastive learning and pre-trained encoder for protein-ligand binding sites prediction
  ☆30Updated 4 months ago
• PDB-REDO / AlphaBridge
  ☆32Updated this week
• lulab / OligoFormer
  ☆24Updated last month
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆27Updated this week
• oxpig / saab_plus
  ☆25Updated 5 years ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year