☆27Feb 27, 2023Updated 3 years ago
Alternatives and similar repositories for DR-BERT
Users that are interested in DR-BERT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆17Feb 19, 2026Updated 3 months ago
- Protein Sequence Evolutionary Information Language Model☆14Oct 5, 2023Updated 2 years ago
- Fast and accurate prediction of coiled coil domains in protein sequences. ☆27Dec 17, 2023Updated 2 years ago
- This is a Python implementation of the sequence design algorithm DAEDALUS for scaffolded DNA origami☆19May 11, 2026Updated 2 weeks ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SV genotyper for long reads with a variation graph☆16Apr 15, 2026Updated last month
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆669Jan 15, 2026Updated 4 months ago
- Building more accurate protein structures from backbone torsion angles☆15Mar 21, 2025Updated last year
- protein backbone refinement☆15Sep 12, 2024Updated last year
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆20Feb 6, 2023Updated 3 years ago
- ☆40Aug 31, 2021Updated 4 years ago
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆30Jan 17, 2024Updated 2 years ago
- Complete saturation mutagenesis of a protein using ESM☆18Feb 20, 2024Updated 2 years ago
- Code for RL-DIF☆16Jun 24, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆89Nov 18, 2025Updated 6 months ago
- ☆16Apr 11, 2025Updated last year
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- ☆35Nov 22, 2023Updated 2 years ago
- ☆69Apr 8, 2025Updated last year
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆31Sep 17, 2025Updated 8 months ago
- ☆10Feb 18, 2020Updated 6 years ago
- Template-based protein design with Raygun☆81Apr 12, 2026Updated last month
- AlphaFlow Reinforcement Learning☆10Apr 13, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Protein design and variant prediction using autoregressive generative models☆23Feb 27, 2023Updated 3 years ago
- Rendering protein mutation movies from predicted 3D structures☆20Dec 7, 2023Updated 2 years ago
- ☆18Aug 28, 2023Updated 2 years ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆173Dec 24, 2023Updated 2 years ago
- Transmembrane proteins predicted through Language Model embeddings☆51Feb 24, 2026Updated 3 months ago
- Implementation of FoldMark: Safeguarding Protein Structure Generative Models with Distributional and Evolutionary Watermarking☆24Apr 19, 2026Updated last month
- Training scripts for BERTax☆12Jun 12, 2024Updated last year
- Trying to train LoRAs for ESM-2☆13Aug 6, 2023Updated 2 years ago
- ☆15Dec 7, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An accurate and efficient protein sequence design approach☆27Mar 16, 2025Updated last year
- PyMOL plugin to import Alphafold2 models hosted by EMBL, based on fetch-functionality☆23May 12, 2026Updated 2 weeks ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆57Dec 17, 2023Updated 2 years ago
- SWift and Optimized Recognition of protein Domains☆30Apr 6, 2026Updated last month
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆39May 30, 2025Updated 11 months ago
- Package for reading, analysis and visualization of metadynamics HILLS with 3 collective variables (addendum to metadynminer)☆11Apr 29, 2022Updated 4 years ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆70Aug 29, 2025Updated 8 months ago