Alternatives and similar repositories for CodonAdaptationIndex

Users that are interested in CodonAdaptationIndex are comparing it to the libraries listed below

• tlawrence3 / amPEPpy
  ☆29Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆77Updated last week
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆52Updated 2 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆97Updated 10 months ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆157Updated 2 years ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 3 years ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆49Updated 2 weeks ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated 2 years ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆62Updated 5 years ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆36Updated 4 years ago
• soedinglab / MMseqs
  ☆14Updated 9 years ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 5 months ago
• Lattice-Automation / primers
  A PCR primer tool for DNA assembly flows
  ☆34Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆29Updated 2 years ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆168Updated last year
• cusbg / traveler
  Template-based RNA secondary structure visualization
  ☆26Updated last year
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆30Updated 11 months ago
• ebi-jdispatcher / webservice-clients
  A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs
  ☆54Updated last year
• psipred / disopred
  Protein structural disorder prediction
  ☆20Updated last year
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆32Updated 2 years ago
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆49Updated 2 weeks ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆43Updated 3 weeks ago
• amaurypm / pseqsid
  Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
  ☆18Updated last year
• Merck / bgc-pipeline
  ☆12Updated 11 months ago
• Arcadia-Science / ProteinCartography
  A pipeline to build similarity maps of protein space
  ☆40Updated last month
• Orpowell / alphafold-analyser
  A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.
  ☆14Updated last month
• mariodosreis / tai
  The tRNA adaptation index
  ☆19Updated 7 months ago