Benjamin-Lee / CodonAdaptationIndexLinks
Python Implementation of Codon Adaption Index
☆37Updated 2 years ago
Alternatives and similar repositories for CodonAdaptationIndex
Users that are interested in CodonAdaptationIndex are comparing it to the libraries listed below
Sorting:
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 weeks ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆39Updated this week
- software for the analysis and visualization of deep mutational scanning data☆34Updated 2 years ago
- Code for LazyAF pipeline☆20Updated last year
- Find common blocks and differences between DNA sequences☆42Updated 2 months ago
- Python framework for doing ancestral sequence reconstruction☆38Updated 11 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- ☆11Updated 2 years ago
- The tRNA adaptation index☆18Updated 2 months ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆19Updated last year
- UniProt Id Mapping through API☆34Updated 8 months ago
- Learning and Aligning Large Protein Families with support of protein language models.☆25Updated this week
- A Pure-Python parser of HMMER3 output☆17Updated 8 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆31Updated last week
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆21Updated last month
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆45Updated last week
- Protein Sequence Annotation with Language Models☆21Updated 3 weeks ago
- a pipeline to build similarity maps of protein space☆35Updated 6 months ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆14Updated 5 years ago
- Discovery of conserved gene clusters in multiple genomes☆81Updated last month
- Multi-class signal peptide prediction and structure decoding model.☆87Updated 4 months ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆67Updated this week
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆32Updated 2 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 3 weeks ago
- Associated code for EvoWeaver publication☆15Updated last month
- ORFFinder in Python☆16Updated 10 months ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago