Benjamin-Lee / CodonAdaptationIndexLinks
Python Implementation of Codon Adaption Index
☆37Updated 2 years ago
Alternatives and similar repositories for CodonAdaptationIndex
Users that are interested in CodonAdaptationIndex are comparing it to the libraries listed below
Sorting:
- Comprehensive Python client for the Uniprot REST API☆54Updated 3 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated last month
- Multi-class signal peptide prediction and structure decoding model.☆102Updated 11 months ago
- ☆29Updated last year
- An RNA manipulation library.☆56Updated last year
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆172Updated last year
- software for the analysis and visualization of deep mutational scanning data☆34Updated 3 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated this week
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Codon usage tables in code-friendly format + Python bindings☆42Updated 8 months ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆30Updated last year
- A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs☆54Updated last year
- A PCR primer tool for DNA assembly flows☆33Updated last year
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆47Updated 3 weeks ago
- ☆12Updated last year
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆63Updated 5 years ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆33Updated 3 weeks ago
- ☆14Updated 9 years ago
- DeepECtransformer☆29Updated 2 years ago
- RNA Structural Covariation Above Phylogenetic Expectation☆18Updated last month
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆18Updated last year
- Python framework for doing ancestral sequence reconstruction☆42Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- The tRNA adaptation index☆19Updated 8 months ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆50Updated last month
- iCodon customizes gene expression based on the codon composition☆15Updated 2 years ago
- A pipeline to build similarity maps of protein space☆40Updated 3 months ago
- Find common blocks and differences between DNA sequences☆42Updated 2 months ago