Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
☆84Apr 3, 2026Updated last month
Alternatives and similar repositories for R2DT
Users that are interested in R2DT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Template-based RNA secondary structure visualization☆29Nov 20, 2024Updated last year
- Draw RNA secondary structures in python.☆52Jun 24, 2025Updated 10 months ago
- ☆22Jul 21, 2023Updated 2 years ago
- RNA secondary structure prediction tool☆20Updated this week
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆17Jan 29, 2026Updated 3 months ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆65Apr 3, 2026Updated last month
- With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...☆177Nov 24, 2023Updated 2 years ago
- QRNAS: Quick Refinement of Nucleic Acid Structures☆18Apr 30, 2025Updated last year
- ☆17Jun 22, 2024Updated last year
- RNA secondary structure/sequence profiles for homology search and alignment☆129Apr 22, 2026Updated 2 weeks ago
- RNA Structural Covariation Above Phylogenetic Expectation☆19Apr 28, 2026Updated last week
- Public repository for ShapeMapper 2 releases☆42Mar 27, 2026Updated last month
- The ViennaRNA Package☆404Feb 24, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Simulation code for the prediction of RNA structures.☆13Jan 21, 2025Updated last year
- Create force-directed graphs of RNA secondary structures.☆111Jun 6, 2020Updated 5 years ago
- RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io☆14Nov 3, 2022Updated 3 years ago
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆34Jan 25, 2026Updated 3 months ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆186Apr 8, 2026Updated last month
- A platform to do RNA science☆28Mar 7, 2021Updated 5 years ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆67Jul 17, 2024Updated last year
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆23Apr 30, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆11Feb 10, 2024Updated 2 years ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 2 years ago
- Rapid mining of RNA structure motifs from profiling data.☆14Oct 20, 2021Updated 4 years ago
- Grace (xmgrace) plotting tool☆14May 25, 2017Updated 8 years ago
- This is a GitHub Repository containing the data and code used for a thorough comparison of 11 ligand binding site prediction tools☆18Nov 19, 2024Updated last year
- An R package to process and analyze transcriptomic data☆19Jun 18, 2025Updated 10 months ago
- A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.☆30Mar 23, 2026Updated last month
- R Data Exploration for Serratus☆16Mar 29, 2023Updated 3 years ago
- Semiautomated layout of RNA tertiary structure diagrams☆15Feb 26, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆18Aug 16, 2021Updated 4 years ago
- RiboNucleic Acid (RNA) Language Model☆162Updated this week
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Mar 19, 2022Updated 4 years ago
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆20Apr 3, 2021Updated 5 years ago
- ☆38Dec 15, 2023Updated 2 years ago
- Arnie-based DegScore tool.☆27Sep 30, 2022Updated 3 years ago
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 4 months ago