Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
☆85Jul 19, 2026Updated last week
Alternatives and similar repositories for R2DT
Users that are interested in R2DT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Template-based RNA secondary structure visualization☆29Nov 20, 2024Updated last year
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Updated this week
- Draw RNA secondary structures in python.☆54Jun 24, 2025Updated last year
- QRNAS: Quick Refinement of Nucleic Acid Structures☆18Apr 30, 2025Updated last year
- ☆23Jul 21, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆17Jul 21, 2026Updated last week
- RNA secondary structure prediction tool☆20Jul 3, 2026Updated 3 weeks ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆68May 8, 2026Updated 2 months ago
- With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...☆178Nov 24, 2023Updated 2 years ago
- RNA secondary structure/sequence profiles for homology search and alignment☆130Jul 17, 2026Updated last week
- RNA Structural Covariation Above Phylogenetic Expectation☆24Jul 22, 2026Updated last week
- Public repository for ShapeMapper 2 releases☆44Mar 27, 2026Updated 4 months ago
- The ViennaRNA Package☆421Feb 24, 2026Updated 5 months ago
- RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io☆14Nov 3, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Create force-directed graphs of RNA secondary structures.☆113Jun 6, 2020Updated 6 years ago
- Simulation code for the prediction of RNA structures.☆14Jan 21, 2025Updated last year
- to assess structural quality of RNA using 3D CNN☆15Aug 17, 2018Updated 7 years ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- A platform to do RNA science☆28Mar 7, 2021Updated 5 years ago
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆25Jul 1, 2026Updated 3 weeks ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆185Apr 8, 2026Updated 3 months ago
- Rapid mining of RNA structure motifs from profiling data.☆14Oct 20, 2021Updated 4 years ago
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆11Feb 10, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- wwPDB PDBx/mmCIF Dictionary☆10Updated this week
- ☆17Jun 22, 2024Updated 2 years ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 2 years ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆19Aug 16, 2021Updated 4 years ago
- An R package to process and analyze transcriptomic data☆19Jun 18, 2025Updated last year
- This is a GitHub Repository containing the data and code used for a thorough comparison of 11 ligand binding site prediction tools☆18Nov 19, 2024Updated last year
- Grace (xmgrace) plotting tool☆14May 25, 2017Updated 9 years ago
- R Data Exploration for Serratus☆16Mar 29, 2023Updated 3 years ago
- A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.☆31Mar 23, 2026Updated 4 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆16Mar 19, 2026Updated 4 months ago
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆20Apr 3, 2021Updated 5 years ago
- rnalib: a python-based transcriptomics library☆13Updated this week
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Mar 19, 2022Updated 4 years ago
- ☆40Dec 15, 2023Updated 2 years ago
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆15May 20, 2022Updated 4 years ago
- Arnie-based DegScore tool.☆27Sep 30, 2022Updated 3 years ago