Alternatives and similar repositories for R2DT:

Users that are interested in R2DT are comparing it to the libraries listed below

• cusbg / traveler
  Template-based RNA secondary structure visualization
  ☆26Updated 4 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆84Updated 2 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆76Updated 3 weeks ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆64Updated 7 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆47Updated 7 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆78Updated last week
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆38Updated last week
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆35Updated 2 months ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆44Updated 5 years ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆82Updated last year
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆84Updated last year
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆124Updated 4 months ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆75Updated 2 weeks ago
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated last year
• ntranoslab / esm-variants
  ☆71Updated last year
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆49Updated last month
• Lattice-Automation / primers
  A PCR primer tool for DNA assembly flows
  ☆31Updated 11 months ago
• prehensilecode / alphafold_singularity
  Singularity recipe for AlphaFold
  ☆35Updated 5 months ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆31Updated last month
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆30Updated 5 months ago
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆10Updated 3 years ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆32Updated 9 months ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆31Updated 6 months ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆22Updated 4 months ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆95Updated last month
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆38Updated 3 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• satoken / centroid-rna-package
  Centroid RNA package
  ☆19Updated 4 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆53Updated last week
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆35Updated 3 years ago