DessimozLab / fold_treeLinks
snakemake pipeline for creating trees from sequence sets
☆78Updated 2 weeks ago
Alternatives and similar repositories for fold_tree
Users that are interested in fold_tree are comparing it to the libraries listed below
Sorting:
- Multiple Protein Structure Alignment at Scale with FoldMason☆174Updated last month
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆130Updated 6 months ago
- Multi-class signal peptide prediction and structure decoding model.☆84Updated 4 months ago
- a pipeline to build similarity maps of protein space☆34Updated 5 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆106Updated 9 months ago
- MMseqs2 app to run on your workstation or servers☆80Updated 3 weeks ago
- Protein 3D structure prediction pipeline☆80Updated this week
- Transmembrane proteins predicted through Language Model embeddings☆36Updated 3 weeks ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆72Updated last month
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆99Updated 10 months ago
- A brief, quick and dirty introduction to Sequence Similarity Networks☆21Updated 2 years ago
- Python framework for doing ancestral sequence reconstruction☆38Updated 10 months ago
- A domain parser for Alphafold models☆38Updated last year
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆36Updated 9 months ago
- Protein structure alignment and search algorithm☆59Updated this week
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆88Updated last year
- BGC Detection and Classification Using Deep Learning☆143Updated last year
- Genomic language model predicts protein co-regulation and function☆77Updated 2 months ago
- Feature map and function annotation of Proteins☆33Updated 11 months ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆56Updated 4 years ago
- Evolutionary velocity with protein language models☆90Updated last year
- UniProt Id Mapping through API☆31Updated 8 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆71Updated 5 months ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- Models, design algorithms, and other software related to Salis lab publications☆32Updated 6 months ago
- Install alphafold on the local machine, get out of docker.☆101Updated 3 years ago
- ☆30Updated 3 years ago
- A tool for protein and protein complex structure prediction.☆28Updated this week
- ☆49Updated 2 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆141Updated last month