DessimozLab / fold_treeLinks
snakemake pipeline for creating trees from sequence sets
☆85Updated 3 months ago
Alternatives and similar repositories for fold_tree
Users that are interested in fold_tree are comparing it to the libraries listed below
Sorting:
- Multiple Protein Structure Alignment at Scale with FoldMason☆184Updated this week
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆142Updated 8 months ago
- Multi-class signal peptide prediction and structure decoding model.☆91Updated 6 months ago
- BGC Detection and Classification Using Deep Learning☆152Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆118Updated 11 months ago
- MMseqs2 app to run on your workstation or servers☆91Updated last week
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆57Updated 4 years ago
- Transmembrane proteins predicted through Language Model embeddings☆38Updated 3 weeks ago
- Protein 3D structure prediction pipeline☆85Updated last week
- UniProt Id Mapping through API☆34Updated 10 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆77Updated 3 months ago
- Cython bindings and Python interface to HMMER3.☆146Updated last week
- A brief, quick and dirty introduction to Sequence Similarity Networks☆21Updated 2 years ago
- Protein structure alignment and search algorithm☆69Updated last week
- a pipeline to build similarity maps of protein space☆37Updated 8 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆196Updated last month
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆73Updated 8 months ago
- Python framework for doing ancestral sequence reconstruction☆41Updated last year
- ☆11Updated 8 months ago
- Conservation analysis of homologous proteins with Python☆12Updated 4 years ago
- Genomic language model predicts protein co-regulation and function☆81Updated 5 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- Feature map and function annotation of Proteins☆33Updated last year
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆69Updated this week
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆14Updated 2 months ago
- Fast protein structure searching or your money back☆110Updated 4 months ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆21Updated 3 months ago
- Protein structure comparison tools such as SSAP and SNAP☆64Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆47Updated 6 years ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆54Updated 3 months ago