DessimozLab / fold_tree
snakemake pipeline for creating trees from sequence sets
☆67Updated last week
Related projects: ⓘ
- Multiple Protein Structure Alignment at Scale with FoldMason☆111Updated last week
- Multi-class signal peptide prediction and structure decoding model.☆78Updated 7 months ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆78Updated this week
- MMseqs2 app to run on your workstation or servers☆55Updated this week
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆52Updated 3 years ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆22Updated 11 months ago
- a pipeline to build similarity maps of protein space☆28Updated 2 months ago
- UniProt Id Mapping through API☆28Updated 2 weeks ago
- Python framework for doing ancestral sequence reconstruction☆32Updated 2 months ago
- Singularity recipe for AlphaFold☆32Updated last year
- Degenerate Codon Design☆12Updated 4 years ago
- Transmembrane proteins predicted through Language Model embeddings☆26Updated 6 months ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆34Updated 3 weeks ago
- Protein structure comparison tools such as SSAP and SNAP☆57Updated 10 months ago
- BGC Detection and Classification Using Deep Learning☆123Updated 10 months ago
- Evolutionary velocity with protein language models☆83Updated 10 months ago
- ☆63Updated 11 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆59Updated last week
- Conservation analysis of homologous proteins with Python☆9Updated 3 years ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆142Updated 2 weeks ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆12Updated 3 weeks ago
- ☆16Updated 2 years ago
- RNA secondary structure/sequence profiles for homology search and alignment☆100Updated 5 months ago
- Protein 3D structure prediction pipeline☆51Updated last month
- A domain parser for Alphafold models☆29Updated 9 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆22Updated this week
- Mutation effects predicted from sequence co-variation☆59Updated 7 years ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆108Updated this week
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆103Updated last month
- ☆44Updated 3 months ago