DessimozLab / fold_tree
snakemake pipeline for creating trees from sequence sets
☆73Updated last month
Alternatives and similar repositories for fold_tree:
Users that are interested in fold_tree are comparing it to the libraries listed below
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆116Updated 2 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆154Updated last week
- Multi-class signal peptide prediction and structure decoding model.☆83Updated 2 weeks ago
- a pipeline to build similarity maps of protein space☆31Updated 2 months ago
- MMseqs2 app to run on your workstation or servers☆70Updated this week
- Python framework for doing ancestral sequence reconstruction☆37Updated 7 months ago
- Protein 3D structure prediction pipeline☆70Updated this week
- UniProt Id Mapping through API☆31Updated 4 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆100Updated 5 months ago
- A brief, quick and dirty introduction to Sequence Similarity Networks☆21Updated 2 years ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆55Updated 4 years ago
- Transmembrane proteins predicted through Language Model embeddings☆33Updated 3 weeks ago
- BGC Detection and Classification Using Deep Learning☆137Updated last year
- Cython bindings and Python interface to HMMER3.☆132Updated this week
- Discovery of conserved gene clusters in multiple genomes☆59Updated last week
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- Degenerate Codon Design☆13Updated 5 years ago
- Protein structure alignment and search algorithm☆51Updated this week
- Feature map and function annotation of Proteins☆31Updated 8 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆104Updated 3 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆68Updated last week
- Models, design algorithms, and other software related to Salis lab publications☆28Updated 3 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆153Updated 5 months ago
- Evolutionary velocity with protein language models☆84Updated last year
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆99Updated last year
- Software for predicting translation initiation rates in bacteria☆21Updated 2 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆81Updated 10 months ago
- Protein structure comparison tools such as SSAP and SNAP