DessimozLab / fold_tree
snakemake pipeline for creating trees from sequence sets
☆76Updated 2 weeks ago
Alternatives and similar repositories for fold_tree:
Users that are interested in fold_tree are comparing it to the libraries listed below
- Multiple Protein Structure Alignment at Scale with FoldMason☆164Updated this week
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆123Updated 4 months ago
- Multi-class signal peptide prediction and structure decoding model.☆83Updated last month
- Transmembrane proteins predicted through Language Model embeddings☆35Updated 2 months ago
- Protein 3D structure prediction pipeline☆77Updated this week
- MMseqs2 app to run on your workstation or servers☆75Updated last week
- Python framework for doing ancestral sequence reconstruction☆38Updated 8 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆101Updated 7 months ago
- a pipeline to build similarity maps of protein space☆33Updated 3 months ago
- Cython bindings and Python interface to HMMER3.☆135Updated last week
- A brief, quick and dirty introduction to Sequence Similarity Networks☆21Updated 2 years ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆55Updated 4 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆35Updated 6 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆71Updated last week
- BGC Detection and Classification Using Deep Learning☆140Updated last year
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆43Updated 5 years ago
- Discovery of conserved gene clusters in multiple genomes☆77Updated last week
- Feature map and function annotation of Proteins☆32Updated 9 months ago
- ☆71Updated last year
- Software for predicting translation initiation rates in bacteria☆22Updated 4 months ago
- UniProt Id Mapping through API☆31Updated 6 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆107Updated 4 months ago
- Evolutionary velocity with protein language models☆90Updated last year
- Degenerate Codon Design☆13Updated 5 years ago
- Fast protein structure searching or your money back☆95Updated last month
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆44Updated 3 weeks ago
- Protein structure alignment and search algorithm☆59Updated this week
- Genomic language model predicts protein co-regulation and function☆75Updated last week
- ColabFold protocol☆50Updated 5 months ago