Alternatives and similar repositories for fold_tree

Users that are interested in fold_tree are comparing it to the libraries listed below

• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆203Updated 2 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆102Updated 10 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆170Updated last year
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆157Updated 2 years ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆121Updated last year
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆31Updated 3 years ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆36Updated 3 months ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆62Updated 5 years ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆43Updated 4 months ago
• Arcadia-Science / ProteinCartography
  A pipeline to build similarity maps of protein space
  ☆40Updated 2 months ago
• Merck / bgc-pipeline
  ☆12Updated last year
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆79Updated last month
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆77Updated last month
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆91Updated last week
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆101Updated last week
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆152Updated last week
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆13Updated 4 years ago
• HUST-NingKang-Lab / BGC-Prophet
  A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …
  ☆23Updated last month
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆85Updated 9 months ago
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆213Updated 5 months ago
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆66Updated 2 years ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆42Updated last year
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆77Updated this week
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆58Updated 7 months ago
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆77Updated 4 months ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆76Updated 3 months ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆34Updated last year
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆56Updated 3 years ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆134Updated last year
• PeterDeWeirdt / defense_predictor
  Python package to run DefensePredictor, a model that identifies proteins involved in anti-phage defense
  ☆14Updated last week