UCLOrengoGroup / cath-tools
Protein structure comparison tools such as SSAP and SNAP
☆62Updated last year
Alternatives and similar repositories for cath-tools:
Users that are interested in cath-tools are comparing it to the libraries listed below
- snakemake pipeline for creating trees from sequence sets☆70Updated last week
- Multiple Protein Structure Alignment at Scale with FoldMason☆147Updated this week
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆108Updated last month
- Protein 3D structure prediction pipeline☆68Updated this week
- nucleic acid folding☆86Updated 5 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆152Updated 4 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆65Updated this week
- Fast protein structure searching or your money back☆93Updated last month
- Evolutionary velocity with protein language models☆84Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆50Updated last month
- MMseqs2 app to run on your workstation or servers☆67Updated this week
- software for the analysis and visualization of deep mutational scanning data☆33Updated 2 years ago
- Direct coupling analysis software for protein and RNA sequences☆49Updated last year
- Mutation effects predicted from sequence co-variation☆61Updated 7 years ago
- Multi-class signal peptide prediction and structure decoding model.☆83Updated 11 months ago
- PSIPRED Protein Secondary Structure Predictor☆53Updated last month
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆79Updated 9 months ago
- Transmembrane proteins predicted through Language Model embeddings☆32Updated 10 months ago
- Inference of couplings in proteins and RNAs from sequence variation☆106Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆99Updated 4 months ago
- Models, design algorithms, and other software related to Salis lab publications☆26Updated 2 months ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆22Updated last year
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆79Updated 4 months ago
- sensitive and precise assembly of short sequencing reads☆152Updated 3 months ago
- a pipeline to build similarity maps of protein space☆30Updated last month
- Toolbox for including enzyme constraints on a genome-scale model.☆68Updated 2 months ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆82Updated 11 months ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆29Updated last month
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆15Updated 5 years ago
- ☆69Updated last year