Alternatives and similar repositories for cath-tools

Users that are interested in cath-tools are comparing it to the libraries listed below

• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆73Updated last month
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆151Updated 9 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆94Updated 7 months ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 2 years ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆47Updated 6 years ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆85Updated 4 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆86Updated this week
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆57Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆69Updated 8 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated last year
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆96Updated 3 weeks ago
• ViennaRNA / forna
  Create force-directed graphs of RNA secondary structures.
  ☆105Updated 5 years ago
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆199Updated last month
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆62Updated last year
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆113Updated 2 years ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆153Updated last year
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆187Updated this week
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆109Updated 4 years ago
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆148Updated last month
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆48Updated 2 months ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆43Updated 2 weeks ago
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆35Updated 10 months ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆152Updated 4 months ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆70Updated this week
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆125Updated 10 months ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆112Updated 5 months ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆78Updated this week
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆119Updated last year
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆102Updated last month