UCLOrengoGroup / cath-toolsLinks
Protein structure comparison tools such as SSAP and SNAP
☆67Updated 2 years ago
Alternatives and similar repositories for cath-tools
Users that are interested in cath-tools are comparing it to the libraries listed below
Sorting:
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆80Updated last week
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆179Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆102Updated last year
- Mutation effects predicted from sequence co-variation☆73Updated 8 years ago
- WebLogo 3: Sequence Logos redrawn☆154Updated 2 weeks ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆220Updated last month
- snakemake pipeline for creating trees from sequence sets☆97Updated this week
- Protein 3D structure prediction pipeline☆97Updated last week
- MMseqs2 app to run on your workstation or servers☆105Updated this week
- Evolutionary velocity with protein language models☆97Updated 2 months ago
- Transmembrane proteins predicted through Language Model embeddings☆44Updated 6 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆239Updated last week
- Inference of couplings in proteins and RNAs from sequence variation☆117Updated 3 years ago
- BGC Detection and Classification Using Deep Learning☆156Updated 2 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆80Updated this week
- software for the analysis and visualization of deep mutational scanning data☆34Updated 3 years ago
- Create force-directed graphs of RNA secondary structures.☆110Updated 5 years ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆65Updated 5 years ago
- Models, design algorithms, and other software related to Salis lab publications☆36Updated last year
- Neural Networks for Protein Sequence Alignment☆135Updated last year
- An RNA manipulation library.☆56Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆51Updated 2 months ago
- Diverse Genomic Embedding Benchmark☆50Updated 5 months ago
- nucleic acid folding☆110Updated 6 months ago
- Cython bindings and Python interface to HMMER3.☆156Updated 2 weeks ago
- ☆86Updated 2 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆48Updated last month
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- ☆12Updated last year
- Python Implementation of Codon Adaption Index☆37Updated 3 years ago