Alternatives and similar repositories for cath-tools:

Users that are interested in cath-tools are comparing it to the libraries listed below

• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆124Updated 4 months ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆164Updated 2 weeks ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆76Updated last month
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆44Updated 5 years ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆35Updated 2 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆79Updated last week
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆76Updated 3 weeks ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• OrensteinLab / DeCoDe
  Degenerate Codon Design
  ☆13Updated 5 years ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆84Updated 2 months ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆91Updated 8 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆64Updated 7 years ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆72Updated 3 weeks ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 2 years ago
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆155Updated 7 months ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆54Updated last year
• greener-group / progres
  Fast protein structure searching or your money back
  ☆102Updated last week
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆57Updated 2 weeks ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆50Updated last year
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆107Updated 5 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆39Updated 9 months ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆54Updated 4 months ago
• Arcadia-Science / ProteinCartography
  a pipeline to build similarity maps of protein space
  ☆33Updated 4 months ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆83Updated last year
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆107Updated 4 years ago
• ntranoslab / esm-variants
  ☆73Updated last year
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆108Updated 2 years ago
• JudeWells / chainsaw
  ☆37Updated 6 months ago
• Edinburgh-Genome-Foundry / codon-usage-tables
  Codon usage tables in code-friendly format + Python bindings
  ☆36Updated 2 weeks ago