UCLOrengoGroup / cath-toolsLinks
Protein structure comparison tools such as SSAP and SNAP
☆66Updated last year
Alternatives and similar repositories for cath-tools
Users that are interested in cath-tools are comparing it to the libraries listed below
Sorting:
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆156Updated 10 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆206Updated 3 months ago
- MMseqs2 app to run on your workstation or servers☆97Updated 2 weeks ago
- Multi-class signal peptide prediction and structure decoding model.☆96Updated 8 months ago
- snakemake pipeline for creating trees from sequence sets☆91Updated last week
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆75Updated 3 months ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- Protein 3D structure prediction pipeline☆86Updated this week
- Automatic oligonucleotide design for PCR-based gene synthesis☆47Updated 6 years ago
- Fast protein structure searching or your money back☆114Updated 2 weeks ago
- Transmembrane proteins predicted through Language Model embeddings☆39Updated 3 months ago
- Evolutionary velocity with protein language models☆94Updated 2 years ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated last week
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Inference of couplings in proteins and RNAs from sequence variation☆113Updated 2 years ago
- Neural Networks for Protein Sequence Alignment☆130Updated 11 months ago
- Protein structure alignment and search algorithm☆73Updated this week
- An RNA manipulation library.☆56Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆120Updated last year
- ☆12Updated 10 months ago
- Diverse Genomic Embedding Benchmark☆48Updated last month
- Multiple Protein Structure Alignment at Scale with FoldMason☆192Updated 2 weeks ago
- Create force-directed graphs of RNA secondary structures.☆108Updated 5 years ago
- Deep networks for protein functional inference☆177Updated 4 months ago
- WebLogo 3: Sequence Logos redrawn☆152Updated 5 months ago
- PSIPRED Protein Secondary Structure Predictor☆58Updated 3 months ago
- A pipeline to build similarity maps of protein space☆39Updated last week