Alternatives and similar repositories for SalisLabCode

Users that are interested in SalisLabCode are comparing it to the libraries listed below

• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆80Updated this week
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆102Updated last year
• ntranoslab / esm-variants
  ☆86Updated 2 years ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆178Updated last year
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆51Updated 2 months ago
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆13Updated 4 years ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆34Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆72Updated 8 years ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆44Updated 6 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆57Updated 3 years ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆97Updated this week
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆95Updated last month
• Arcadia-Science / ProteinCartography
  A pipeline to build similarity maps of protein space
  ☆40Updated 3 months ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆116Updated 3 years ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆121Updated last year
• Lattice-Automation / primers
  A PCR primer tool for DNA assembly flows
  ☆33Updated last year
• prehensilecode / alphafold_singularity
  Singularity recipe for AlphaFold
  ☆37Updated last year
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆104Updated last week
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆95Updated last week
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆50Updated last year
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆86Updated 10 months ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆225Updated last week
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 4 months ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆44Updated 3 weeks ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆79Updated last week
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆78Updated 4 months ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆48Updated last month
• mmagnus / rna-tools
  🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …
  ☆181Updated 3 weeks ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆88Updated last year
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆20Updated 3 years ago