Alternatives and similar repositories for SalisLabCode

Users that are interested in SalisLabCode are comparing it to the libraries listed below

• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆135Updated 7 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆88Updated 5 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆74Updated last month
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆53Updated last year
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆82Updated last month
• ntranoslab / esm-variants
  ☆74Updated last year
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆46Updated 5 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆66Updated 7 years ago
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆42Updated 5 months ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆87Updated last week
• Lattice-Automation / primers
  A PCR primer tool for DNA assembly flows
  ☆33Updated last year
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆12Updated 4 years ago
• MicroResearchLab / AMP-potency-prediction-EvoGradient
  A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…
  ☆31Updated 4 months ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆146Updated last year
• Merck / bgc-pipeline
  ☆11Updated 7 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆113Updated 10 months ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆42Updated 4 months ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆181Updated last week
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆82Updated 3 months ago
• VivianMonzon / Reciprocal_Best_Structure_Hits
  ☆11Updated 2 years ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆35Updated 2 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆93Updated last year
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆76Updated 2 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆37Updated 2 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆40Updated 2 weeks ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆82Updated last week
• OrensteinLab / DeCoDe
  Degenerate Codon Design
  ☆13Updated 5 years ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆109Updated 2 years ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated last year