Models, design algorithms, and other software related to Salis lab publications
☆38Aug 5, 2026Updated 3 weeks ago
Alternatives and similar repositories for SalisLabCode
Users that are interested in SalisLabCode are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software for predicting translation initiation rates in bacteria☆34Jul 30, 2025Updated last year
- The reference implementation of the SBOL Visual standard☆39Mar 31, 2026Updated 4 months ago
- The Aquarium Lab Operating System☆68Dec 20, 2025Updated 8 months ago
- Package that facilitates pulling database entries from KEGG via its REST API☆14Aug 12, 2026Updated 2 weeks ago
- iGem Marburg 2019☆21Dec 7, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Native python implementation of SBOL 3.0 specification☆47Mar 26, 2025Updated last year
- Sequencing analysis pipeline☆16Dec 12, 2025Updated 8 months ago
- MD_quick_plot helps you plot MD simulation data figures using structural and trajectory files. Compatible formats include GROMACS, AMBER,…☆26Jul 26, 2026Updated last month
- Repository for collective design of an iGEM DNA distribution☆45Apr 7, 2023Updated 3 years ago
- ☆18Dec 2, 2025Updated 8 months ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆44Apr 27, 2026Updated 4 months ago
- Short overhangs design for DNA assembly☆15Jun 8, 2022Updated 4 years ago
- Whole cell model of E. coli implemented with Vivarium☆31Aug 20, 2026Updated last week
- phylogenetic analyses informed by deep mutational scanning data☆15Apr 5, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆19Jan 8, 2025Updated last year
- Promoter activity measurement and modeling; artificial promoter design and testing☆13Mar 24, 2023Updated 3 years ago
- QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources☆48May 12, 2026Updated 3 months ago
- Learning to Generate UTR Sequences for Optimized Ribosome Load and Gene Expression☆25May 11, 2025Updated last year
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆32Nov 7, 2024Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆44Sep 12, 2024Updated last year
- ☆15Apr 17, 2025Updated last year
- A lightweight kmer-based algorithm for designing diagnostic CRISPR assays using genome data.☆13Aug 19, 2024Updated 2 years ago
- A Model Context Protocol (MCP) server that provides comprehensive access to the NCBI Datasets API☆16Dec 21, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Jul 22, 2026Updated last month
- A versatile DNA sequence optimizer☆280Nov 5, 2025Updated 9 months ago
- ☆26Jun 5, 2025Updated last year
- Command-line utilities and scripts for manipulating SBOL data☆22Oct 26, 2025Updated 10 months ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆15Aug 20, 2025Updated last year
- Find common blocks and differences between DNA sequences☆46Nov 5, 2025Updated 9 months ago
- sangerseq_viewer is a python package to automatically visualize Sanger sequencing results and the corresponding annotated sequence map.☆42May 27, 2024Updated 2 years ago
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Jun 25, 2026Updated 2 months ago
- ☆76Feb 13, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- CDK project that leverages an OpenAPI definition to define, document and create an Amazon API Gateway deployment. At deploy time, a Cloud…☆11Dec 24, 2024Updated last year
- The Complete Python Antibody Library☆25Aug 5, 2026Updated 3 weeks ago
- BMRB data visualization tools using python Plotly☆15Aug 21, 2025Updated last year
- ☆15May 8, 2026Updated 3 months ago
- 🎺 Plot DNA digestion band patterns with Python☆20May 12, 2025Updated last year
- Application for mutagenic primer design. Facilitates development of biocatalysts (Green Chemistry) and new therapeutic proteins.☆19Feb 14, 2026Updated 6 months ago
- The funny insult device for everyday use.☆16May 10, 2026Updated 3 months ago