hsalis / SalisLabCodeLinks
Models, design algorithms, and other software related to Salis lab publications
☆35Updated last year
Alternatives and similar repositories for SalisLabCode
Users that are interested in SalisLabCode are comparing it to the libraries listed below
Sorting:
- Multi-class signal peptide prediction and structure decoding model.☆102Updated 10 months ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆170Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆50Updated last month
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated last month
- ☆83Updated 2 years ago
- A PCR primer tool for DNA assembly flows☆34Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆58Updated last week
- Conservation analysis of homologous proteins with Python☆13Updated 4 years ago
- Feature map and function annotation of Proteins☆34Updated last year
- snakemake pipeline for creating trees from sequence sets☆93Updated 2 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆56Updated 3 years ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last week
- Inference of couplings in proteins and RNAs from sequence variation☆114Updated 2 years ago
- A Python project to read and write Snapgene *.dna into dict, json, and biopython object.☆45Updated 5 years ago
- Genomic language model predicts protein co-regulation and function☆85Updated 9 months ago
- Protein 3D structure prediction pipeline☆91Updated last week
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆42Updated 3 weeks ago
- A pipeline to build similarity maps of protein space☆40Updated 2 months ago
- Comprehensive Python client for the Uniprot REST API☆54Updated 2 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆203Updated 2 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆84Updated last year
- Transmembrane proteins predicted through Language Model embeddings☆43Updated 4 months ago
- MMseqs2 app to run on your workstation or servers☆101Updated last week
- Protein structure comparison tools such as SSAP and SNAP☆66Updated 2 years ago
- Contains CHARMING.py and its associated README.md☆12Updated 3 years ago
- Neural Networks for Protein Sequence Alignment☆134Updated last year
- HLA-I ligand predictor☆43Updated 3 months ago
- Species-aware DNA language modeling☆18Updated 2 years ago