SBRG / ssbioLinks
A Python framework for structural systems biology
☆110Updated 5 years ago
Alternatives and similar repositories for ssbio
Users that are interested in ssbio are comparing it to the libraries listed below
Sorting:
- PSIPRED Protein Secondary Structure Predictor☆58Updated 5 months ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆179Updated this week
- cameo - computer aided metabolic engineering & optimization☆122Updated 3 years ago
- D3.js based visualizations of cobrapy metabolic models☆49Updated 5 years ago
- Inference of couplings in proteins and RNAs from sequence variation☆114Updated 2 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last month
- WebLogo 3: Sequence Logos redrawn☆152Updated 7 months ago
- The BiGG Models website server☆85Updated 6 years ago
- Protein structure comparison tools such as SSAP and SNAP☆66Updated 2 years ago
- A python implementation of the Statistical Coupling Analysis (SCA)☆25Updated 6 years ago
- Create force-directed graphs of RNA secondary structures.☆110Updated 5 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- BRENDA parser in python☆22Updated 3 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 4 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated 2 weeks ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- The consensus GEM for Saccharomyces cerevisiae☆114Updated 2 weeks ago
- A Python platform for Structural Bioinformatics☆58Updated 8 months ago
- Evolutionary velocity with protein language models☆94Updated this week
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆63Updated 7 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆79Updated 3 weeks ago
- Release of the whole cell E. coli model.☆73Updated last year
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆30Updated 3 years ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆209Updated this week
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- Software for the visualization of sequence-function relationships☆206Updated 6 months ago
- PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.☆82Updated 9 months ago
- MMseqs2 app to run on your workstation or servers☆99Updated last month
- A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files☆180Updated 6 years ago