SBRG / ssbio
A Python framework for structural systems biology
☆103Updated 3 years ago
Related projects: ⓘ
- Toolbox for including enzyme constraints on a genome-scale model.☆67Updated 3 weeks ago
- Inference of couplings in proteins and RNAs from sequence variation☆99Updated last year
- Evolutionary couplings from protein and RNA sequence alignments☆230Updated 3 weeks ago
- WebLogo 3: Sequence Logos redrawn☆144Updated 2 months ago
- Protein structure comparison tools such as SSAP and SNAP☆57Updated 10 months ago
- Mutation effects predicted from sequence co-variation☆59Updated 7 years ago
- The BiGG Models website server☆78Updated 4 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆50Updated last year
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆26Updated last year
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆150Updated last month
- The consensus GEM for Saccharomyces cerevisiae☆94Updated 3 weeks ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆34Updated 3 weeks ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆34Updated 2 months ago
- nucleic acid folding☆82Updated last month
- Models, design algorithms, and other software related to Salis lab publications☆21Updated 3 weeks ago
- Install alphafold on the local machine, get out of docker.☆97Updated 2 years ago
- Evolutionary velocity with protein language models☆83Updated 10 months ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆100Updated this week
- cameo - computer aided metabolic engineering & optimization☆113Updated last year
- PSIPRED Protein Secondary Structure Predictor☆51Updated 3 years ago
- snakemake pipeline for creating trees from sequence sets☆67Updated last week
- The generic genome-scale metabolic model of Homo sapiens☆95Updated this week
- Create force-directed graphs of RNA secondary structures.☆98Updated 4 years ago
- Degenerate Codon Design☆12Updated 4 years ago
- ReFramed: metabolic modeling package☆53Updated last month
- scripts and facilities for in-silico mutagenesis with FoldX☆49Updated last month
- A python toolbox for 13C metabolic flux analysis☆18Updated 2 weeks ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆33Updated 5 years ago
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆50Updated 8 years ago
- ☆195Updated this week