Alternatives and similar repositories for ssbio

Users that are interested in ssbio are comparing it to the libraries listed below

• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆111Updated 2 years ago
• mmagnus / rna-tools
  🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …
  ☆177Updated 2 weeks ago
• ViennaRNA / forna
  Create force-directed graphs of RNA secondary structures.
  ☆105Updated 5 years ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆111Updated 4 months ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆153Updated 3 months ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆63Updated 2 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆66Updated 7 years ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆57Updated last month
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆64Updated last year
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆118Updated 2 years ago
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆182Updated last week
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 3 years ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆76Updated 3 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆74Updated 2 weeks ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆47Updated 5 years ago
• jbkinney / logomaker
  Software for the visualization of sequence-function relationships
  ☆201Updated 2 months ago
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆274Updated 5 months ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆68Updated 8 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆93Updated last year
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• reynoldsk / pySCA
  A python implementation of the Statistical Coupling Analysis (SCA)
  ☆25Updated 6 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆43Updated 5 months ago
• google-research / proteinfer
  Deep networks for protein functional inference
  ☆176Updated last month
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆58Updated last year
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆91Updated last week
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆94Updated last year
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆35Updated 4 years ago
• wangleiofficial / DSSPparser
  DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom be…
  ☆13Updated 2 years ago