SBRG / ssbio

Related projects ⓘ

Alternatives and complementary repositories for ssbio

• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆148Updated 3 weeks ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆39Updated last month
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 2 years ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆41Updated 4 years ago
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆242Updated last week
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆113Updated 2 years ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆51Updated this week
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆127Updated last year
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆104Updated last year
• OrensteinLab / DeCoDe
  Degenerate Codon Design
  ☆13Updated 4 years ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆66Updated last month
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆38Updated 3 weeks ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆84Updated 3 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆69Updated this week
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆60Updated last year
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆52Updated last year
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆95Updated last week
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆34Updated 5 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆80Updated 5 years ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆26Updated last year
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆24Updated 2 weeks ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆92Updated 2 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆83Updated last year
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆19Updated 2 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆61Updated 7 years ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆72Updated 2 months ago
• mmagnus / rna-tools
  🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …
  ☆152Updated 3 weeks ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆56Updated 3 months ago
• prehensilecode / alphafold_singularity
  Singularity recipe for AlphaFold
  ☆33Updated last week
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆51Updated this week