SBRG / ssbio
A Python framework for structural systems biology
☆107Updated 4 years ago
Alternatives and similar repositories for ssbio:
Users that are interested in ssbio are comparing it to the libraries listed below
- WebLogo 3: Sequence Logos redrawn☆149Updated 4 months ago
- Inference of couplings in proteins and RNAs from sequence variation☆108Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆70Updated 3 weeks ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆57Updated last month
- PSIPRED Protein Secondary Structure Predictor☆54Updated 5 months ago
- The consensus GEM for Saccharomyces cerevisiae☆108Updated last month
- nucleic acid folding☆91Updated 9 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆72Updated this week
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆108Updated 3 months ago
- Degenerate Codon Design☆13Updated 5 years ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆124Updated 5 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 2 months ago
- cameo - computer aided metabolic engineering & optimization☆115Updated 2 years ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- Mutation effects predicted from sequence co-variation☆64Updated 7 years ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆174Updated last month
- The generic genome-scale metabolic model of Homo sapiens☆110Updated 2 weeks ago
- snakemake pipeline for creating trees from sequence sets☆76Updated last week
- The BiGG Models website server☆81Updated 5 years ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆41Updated 2 months ago
- Models, design algorithms, and other software related to Salis lab publications☆31Updated 5 months ago
- Evolutionary couplings from protein and RNA sequence alignments☆263Updated 2 months ago
- MMseqs2 app to run on your workstation or servers☆78Updated last week
- BGC Detection and Classification Using Deep Learning☆140Updated last year
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆56Updated 9 years ago
- Evolutionary velocity with protein language models