SBRG / ssbioLinks
A Python framework for structural systems biology
☆109Updated 4 years ago
Alternatives and similar repositories for ssbio
Users that are interested in ssbio are comparing it to the libraries listed below
Sorting:
- Inference of couplings in proteins and RNAs from sequence variation☆112Updated 2 years ago
- PSIPRED Protein Secondary Structure Predictor☆58Updated last month
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆177Updated last month
- Protein structure comparison tools such as SSAP and SNAP☆65Updated last year
- WebLogo 3: Sequence Logos redrawn☆152Updated 3 months ago
- Mutation effects predicted from sequence co-variation☆68Updated 7 years ago
- Create force-directed graphs of RNA secondary structures.☆104Updated 5 years ago
- Evolutionary velocity with protein language models☆94Updated last year
- Release of the whole cell E. coli model.☆68Updated 8 months ago
- A python implementation of the Statistical Coupling Analysis (SCA)☆25Updated 6 years ago
- cameo - computer aided metabolic engineering & optimization☆118Updated 2 years ago
- Models, design algorithms, and other software related to Salis lab publications☆35Updated 9 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 3 months ago
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆59Updated last month
- Evolutionary couplings from protein and RNA sequence alignments☆275Updated 5 months ago
- The consensus GEM for Saccharomyces cerevisiae☆111Updated 4 months ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆58Updated 5 months ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆101Updated last month
- Software for the visualization of sequence-function relationships☆201Updated 3 months ago
- Draw RNA secondary structures in python.☆48Updated 2 months ago
- PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.☆82Updated 6 months ago
- An RNA manipulation library.☆57Updated last year
- Direct coupling analysis software for protein and RNA sequences☆52Updated last month
- Structural Bioinformatics Training Workshop & Hackathon 2018☆60Updated 3 years ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆194Updated last week
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆57Updated 9 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆47Updated 6 years ago