SBRG / ssbio
A Python framework for structural systems biology
☆107Updated 4 years ago
Alternatives and similar repositories for ssbio:
Users that are interested in ssbio are comparing it to the libraries listed below
- Inference of couplings in proteins and RNAs from sequence variation☆107Updated 2 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆70Updated 4 months ago
- WebLogo 3: Sequence Logos redrawn☆149Updated 2 months ago
- Models, design algorithms, and other software related to Salis lab publications☆28Updated 4 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆41Updated last week
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆55Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆257Updated last week
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆40Updated 3 weeks ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆170Updated 2 weeks ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- Evolutionary velocity with protein language models☆88Updated last year
- The BiGG Models website server☆81Updated 5 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆107Updated last month
- Mutation effects predicted from sequence co-variation☆63Updated 7 years ago
- Protein structure comparison tools such as SSAP and SNAP☆63Updated last year
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆121Updated 3 months ago
- nucleic acid folding☆90Updated 7 months ago
- PSIPRED Protein Secondary Structure Predictor☆54Updated 3 months ago
- The generic genome-scale metabolic model of Homo sapiens☆106Updated this week
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆71Updated this week
- cameo - computer aided metabolic engineering & optimization☆115Updated 2 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- snakemake pipeline for creating trees from sequence sets☆74Updated last month
- Singularity recipe for AlphaFold☆34Updated 3 months ago
- MMseqs2 app to run on your workstation or servers☆73Updated 2 weeks ago
- Degenerate Codon Design☆13Updated 5 years ago
- PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.☆76Updated last week
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆175Updated this week