Alternatives and similar repositories for ssbio

Users that are interested in ssbio are comparing it to the libraries listed below

• mmagnus / rna-tools
  🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …
  ☆179Updated 2 weeks ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆113Updated 2 years ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆121Updated 3 years ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆62Updated 6 months ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆58Updated 4 months ago
• ViennaRNA / forna
  Create force-directed graphs of RNA secondary structures.
  ☆109Updated 5 years ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆152Updated 6 months ago
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆48Updated 5 years ago
• reynoldsk / pySCA
  A python implementation of the Statistical Coupling Analysis (SCA)
  ☆25Updated 6 years ago
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆208Updated this week
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆66Updated 2 years ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆46Updated 2 weeks ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆85Updated 6 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated 2 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 3 years ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆72Updated 11 months ago
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆35Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆70Updated 8 years ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆78Updated 3 weeks ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• jbkinney / logomaker
  Software for the visualization of sequence-function relationships
  ☆206Updated 5 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆77Updated 3 months ago
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆49Updated 4 months ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆113Updated last week
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆106Updated 2 months ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆97Updated 3 weeks ago
• sbl-sdsc / mmtf-workshop-2018
  Structural Bioinformatics Training Workshop & Hackathon 2018
  ☆60Updated 3 years ago
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆290Updated 3 weeks ago