Alternatives and similar repositories for psipred:

Users that are interested in psipred are comparing it to the libraries listed below

• prehensilecode / alphafold_singularity
  Singularity recipe for AlphaFold
  ☆35Updated 5 months ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 4 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆64Updated 7 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆72Updated 3 weeks ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆58Updated 4 years ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆42Updated this week
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆33Updated 2 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆53Updated last week
• graik / biskit
  A Python platform for Structural Bioinformatics
  ☆56Updated 3 weeks ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆76Updated 3 weeks ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆82Updated last year
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆50Updated last year
• realbigws / RaptorX_Property_Fast
  RaptorX-Property: a Standalone Package for Protein Structure Property Prediction
  ☆17Updated 5 years ago
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated last year
• wangleiofficial / DSSPparser
  DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom be…
  ☆13Updated 2 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 8 months ago
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆97Updated 2 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆38Updated 3 years ago
• DennisGankin / species-aware-DNA-LM
  Species-aware DNA language modeling
  ☆18Updated 2 years ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆84Updated 2 months ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆35Updated 3 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 3 years ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆108Updated 2 years ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆39Updated 9 months ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆32Updated 3 months ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆44Updated 5 years ago
• mattarnoldbio / alphapickle
  ☆31Updated last year
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆107Updated 4 years ago
• soedinglab / CCMgen
  ☆20Updated 3 years ago