Alternatives and similar repositories for psipred:

Users that are interested in psipred are comparing it to the libraries listed below

• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆63Updated 7 years ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆81Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆89Updated last year
• prehensilecode / alphafold_singularity
  Singularity recipe for AlphaFold
  ☆34Updated 4 months ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 7 months ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆50Updated 2 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆53Updated 3 months ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆50Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆57Updated 3 years ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆42Updated 2 weeks ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 3 months ago
• wangleiofficial / DSSPparser
  DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom be…
  ☆13Updated 2 years ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆35Updated 3 years ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆43Updated 5 years ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆74Updated last week
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆37Updated 2 years ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆88Updated 6 months ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆57Updated last week
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated last year
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆95Updated last month
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆71Updated this week
• akiyamalab / MEGADOCK
  An ultra-high-performance protein-protein docking for heterogeneous supercomputers
  ☆55Updated last year
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆33Updated last month
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆32Updated 2 years ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆48Updated 4 months ago
• realbigws / RaptorX_Property_Fast
  RaptorX-Property: a Standalone Package for Protein Structure Property Prediction
  ☆16Updated 5 years ago
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆63Updated last year
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆58Updated last year
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 9 months ago
• satoken / centroid-rna-package
  Centroid RNA package
  ☆19Updated 4 years ago