fhalab / evSeqLinks
Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
☆34Updated 3 years ago
Alternatives and similar repositories for evSeq
Users that are interested in evSeq are comparing it to the libraries listed below
Sorting:
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆59Updated last month
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆58Updated 4 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆91Updated last year
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆26Updated 5 months ago
- ☆85Updated last year
- Fast and accurate protein structure prediction☆54Updated 7 months ago
- Mutation effects predicted from sequence co-variation☆68Updated 7 years ago
- GTalign, high-performance protein structure alignment, superposition and search☆49Updated last week
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆104Updated 3 months ago
- Graph Network for protein-protein interface including language model features☆32Updated last year
- Python package to manage protein structures and their annotations☆43Updated last year
- Fast protein structure searching or your money back☆111Updated 4 months ago
- Direct coupling analysis software for protein and RNA sequences☆52Updated last month
- Contact map alignment☆41Updated 4 years ago
- ☆51Updated 2 weeks ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- ☆43Updated 11 months ago
- ☆46Updated 7 months ago
- Predict the structure of immune receptor proteins☆53Updated 9 months ago
- ☆30Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆65Updated 9 months ago
- The DSSP building software☆47Updated 2 years ago
- ☆36Updated 2 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- Tools for annotation, processing and ML for antibody sequences☆32Updated last week
- Pipeline for protein-protein interaction prediction☆23Updated 3 years ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆101Updated last month
- Neural networks for deep mutational scanning data☆69Updated 2 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆53Updated 4 months ago