fhalab / evSeqLinks
Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
☆34Updated 3 years ago
Alternatives and similar repositories for evSeq
Users that are interested in evSeq are comparing it to the libraries listed below
Sorting:
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 8 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆65Updated 5 months ago
- Python package to manage protein structures and their annotations☆45Updated last year
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆28Updated 9 months ago
- ☆86Updated last month
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- ☆46Updated last year
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- Direct coupling analysis software for protein and RNA sequences☆53Updated 5 months ago
- Fast and accurate protein structure prediction☆56Updated 11 months ago
- GTalign, high-performance protein structure alignment, superposition and search☆52Updated 4 months ago
- ☆54Updated 4 months ago
- Tools for annotation, processing and ML for antibody sequences☆35Updated last week
- ☆31Updated last year
- Contact map alignment☆41Updated 4 years ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆110Updated last month
- Fast indexing and search of discontinuous motifs in protein structures☆108Updated this week
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- Graph Network for protein-protein interface including language model features☆34Updated last year
- Detection of remote homology by comparison of protein language model representations☆59Updated last year
- Predict the structure of immune receptor proteins☆56Updated last year
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- Pipeline for protein-protein interaction prediction☆27Updated 3 years ago
- Machine learning-driven antibody design☆62Updated 2 years ago
- Deciphering protein evolution and fitness landscapes with latent space models☆35Updated 4 years ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…☆63Updated last month
- ColabFold protocol☆57Updated last year
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆67Updated last year
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆117Updated last year