Inference of couplings in proteins and RNAs from sequence variation
☆122Jan 21, 2023Updated 3 years ago
Alternatives and similar repositories for plmc
Users that are interested in plmc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Evolutionary couplings from protein and RNA sequence alignments☆305Apr 20, 2026Updated last month
- Visually explore covariation in protein families☆41Dec 8, 2019Updated 6 years ago
- Mutation effects predicted from sequence co-variation☆75Sep 3, 2017Updated 8 years ago
- A generative latent variable model for biological sequence families.☆250Mar 15, 2022Updated 4 years ago
- Run Jupyter on Orchestra 2☆12Jan 18, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape☆10Jun 11, 2022Updated 3 years ago
- Direct coupling analysis software for protein and RNA sequences☆61Jul 21, 2025Updated 10 months ago
- Variational Bayes for discrete undirected models☆11Aug 7, 2017Updated 8 years ago
- Repository containing scripts and analysis for ML-Guided Acyl-ACP Reductase Engineering paper☆11Nov 21, 2023Updated 2 years ago
- Universal framework for physically based computational protein design☆37Aug 19, 2023Updated 2 years ago
- a pytorch version for GREMLIN, used to predict the protein contacts by coevolution method.☆17May 30, 2021Updated 4 years ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆31Aug 9, 2024Updated last year
- ☆33Sep 19, 2025Updated 8 months ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆114Nov 8, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆78Oct 27, 2021Updated 4 years ago
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆23Jan 27, 2022Updated 4 years ago
- Remote protein homology detection suite.☆622Aug 12, 2025Updated 9 months ago
- Deep ResNet-based protein contact prediction☆19Mar 30, 2020Updated 6 years ago
- Pseudo Likelihood Maximization for protein in Julia☆52May 15, 2025Updated last year
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 8 years ago
- UniRep model, usage, and examples.☆362Mar 1, 2026Updated 2 months ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 6 years ago
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆29May 26, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Aug 23, 2020Updated 5 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆18May 2, 2021Updated 5 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆167Aug 24, 2023Updated 2 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Mar 25, 2019Updated 7 years ago
- Protein structure descriptors and alignment based on 3D Zernike moments.☆40Apr 10, 2026Updated last month
- The matching routine for interologs identification based on co-evolution☆11Jul 17, 2018Updated 7 years ago
- ☆50Sep 4, 2025Updated 8 months ago
- Visual Convolutional Neural Graph Fingerprints in Theano/Lasagne☆35Sep 23, 2016Updated 9 years ago
- ☆12May 3, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An evolutionary context-integrated deep learning framework for protein engineering☆71Jun 1, 2022Updated 3 years ago
- OPUS-TASS: A Protein Backbone Torsion Angles and Secondary Structure Predictor Based on Ensemble Neural Networks☆10Jul 9, 2020Updated 5 years ago
- Deep learning based prediction of pi-helices in protein sequences☆11Mar 24, 2023Updated 3 years ago
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 4 years ago
- ☆27Feb 16, 2022Updated 4 years ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,059May 12, 2026Updated last week
- Reimplementation of the UniRep protein featurization model.☆108Sep 3, 2024Updated last year