Alternatives and similar repositories for plmc

Users that are interested in plmc are comparing it to the libraries listed below

• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆69Updated 8 years ago
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆282Updated last week
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆52Updated 2 months ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆110Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated last year
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆58Updated 3 months ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆241Updated 3 years ago
• mmagnus / rna-tools
  🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …
  ☆178Updated 2 months ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆190Updated last week
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆97Updated 3 weeks ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆60Updated 6 months ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆114Updated last week
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆39Updated 2 months ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆128Updated 11 months ago
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆114Updated last year
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆159Updated 5 months ago
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆72Updated last month
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆60Updated 2 months ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆103Updated last month
• prehensilecode / alphafold_singularity
  Singularity recipe for AlphaFold
  ☆36Updated 11 months ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆47Updated 6 years ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆82Updated last year
• sokrypton / map_align
  Contact map alignment
  ☆41Updated 4 years ago
• harmslab / pdbtools
  A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files
  ☆178Updated 6 years ago
• satoken / centroid-rna-package
  Centroid RNA package
  ☆19Updated 5 years ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆73Updated last month
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆75Updated 6 months ago