debbiemarkslab / plmcLinks
Inference of couplings in proteins and RNAs from sequence variation
β113Updated 2 years ago
Alternatives and similar repositories for plmc
Users that are interested in plmc are comparing it to the libraries listed below
Sorting:
- Mutation effects predicted from sequence co-variationβ70Updated 8 years ago
- π§rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs β¦β178Updated 3 months ago
- Direct coupling analysis software for protein and RNA sequencesβ53Updated 3 months ago
- Fast protein structure searching or your money backβ114Updated 2 weeks ago
- Evolutionary velocity with protein language modelsβ94Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".β59Updated 4 years ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.β73Updated 2 months ago
- Evolutionary couplings from protein and RNA sequence alignmentsβ286Updated last week
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequenceβ60Updated 6 months ago
- MMseqs2 app to run on your workstation or serversβ97Updated 3 weeks ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.β34Updated 3 years ago
- PSIPRED Protein Secondary Structure Predictorβ58Updated 3 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteinsβ164Updated 6 months ago
- Neural Networks for Protein Sequence Alignmentβ130Updated 11 months ago
- Multiple Protein Structure Alignment at Scale with FoldMasonβ192Updated 2 weeks ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learningβ90Updated last year
- PLMSearch enables accurate and fast homologous protein search with only sequences as inputβ74Updated last month
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).β114Updated last year
- Physicochemical properties, indices and descriptors for amino-acid sequences.β105Updated last month
- Transmembrane proteins predicted through Language Model embeddingsβ39Updated 3 months ago
- A generative latent variable model for biological sequence families.β241Updated 3 years ago
- An ultra-high-performance protein-protein docking for heterogeneous supercomputersβ69Updated last year
- scripts and facilities for in-silico mutagenesis with FoldXβ61Updated 3 months ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.β110Updated last year
- python tools for TCR:peptide-MHC modeling and analysisβ82Updated last year
- Detection of remote homology by comparison of protein language model representationsβ56Updated 10 months ago
- Automatic oligonucleotide design for PCR-based gene synthesisβ47Updated 6 years ago
- Official release of the ProGen modelsβ39Updated 9 months ago
- Fast indexing and search of discontinuous motifs in protein structuresβ91Updated last week
- β31Updated 3 years ago