debbiemarkslab / plmcLinks
Inference of couplings in proteins and RNAs from sequence variation
β113Updated 2 years ago
Alternatives and similar repositories for plmc
Users that are interested in plmc are comparing it to the libraries listed below
Sorting:
- Mutation effects predicted from sequence co-variationβ69Updated 8 years ago
- π§rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs β¦β177Updated last month
- Evolutionary velocity with protein language modelsβ94Updated last year
- Evolutionary couplings from protein and RNA sequence alignmentsβ278Updated 2 weeks ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".β59Updated 4 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.β110Updated last year
- Physicochemical properties, indices and descriptors for amino-acid sequences.β103Updated 2 weeks ago
- Direct coupling analysis software for protein and RNA sequencesβ52Updated 2 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteinsβ156Updated 5 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learningβ90Updated last year
- MMseqs2 app to run on your workstation or serversβ96Updated 3 weeks ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequenceβ59Updated 5 months ago
- PSIPRED Protein Secondary Structure Predictorβ58Updated 2 months ago
- A generative latent variable model for biological sequence families.β236Updated 3 years ago
- Multiple Protein Structure Alignment at Scale with FoldMasonβ187Updated this week
- Fast protein structure searching or your money backβ112Updated 5 months ago
- Neural Networks for Protein Sequence Alignmentβ125Updated 10 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.β34Updated 3 years ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).β111Updated last year
- Contact map alignmentβ41Updated 4 years ago
- β108Updated last year
- AlphaFill is an algorithm based on sequence and structure similarity that βtransplantsβ missing compounds to the AlphaFold models. By addβ¦β106Updated 4 months ago
- Official release of the ProGen modelsβ35Updated 7 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.β70Updated 3 weeks ago
- An ultra-high-performance protein-protein docking for heterogeneous supercomputersβ63Updated last year
- python tools for TCR:peptide-MHC modeling and analysisβ82Updated last year
- Bilingual Language Model for Protein Sequence and Structureβ268Updated 8 months ago
- Deciphering protein evolution and fitness landscapes with latent space modelsβ35Updated 3 years ago
- Transmembrane proteins predicted through Language Model embeddingsβ39Updated last month
- RaptorX-Property: a Standalone Package for Protein Structure Property Predictionβ18Updated 6 years ago