debbiemarkslab / plmcLinks
Inference of couplings in proteins and RNAs from sequence variation
β111Updated 2 years ago
Alternatives and similar repositories for plmc
Users that are interested in plmc are comparing it to the libraries listed below
Sorting:
- Mutation effects predicted from sequence co-variationβ66Updated 7 years ago
- π§rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs β¦β177Updated 2 weeks ago
- Evolutionary couplings from protein and RNA sequence alignmentsβ274Updated 5 months ago
- Direct coupling analysis software for protein and RNA sequencesβ51Updated 3 weeks ago
- MMseqs2 app to run on your workstation or serversβ91Updated last week
- Evolutionary velocity with protein language modelsβ93Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learningβ90Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".β60Updated 4 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequenceβ56Updated 4 months ago
- PSIPRED Protein Secondary Structure Predictorβ57Updated last month
- Multiple Protein Structure Alignment at Scale with FoldMasonβ184Updated this week
- python tools for TCR:peptide-MHC modeling and analysisβ80Updated last year
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.β109Updated last year
- Physicochemical properties, indices and descriptors for amino-acid sequences.β99Updated 2 weeks ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as inputβ73Updated 8 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).β107Updated last year
- scripts and facilities for in-silico mutagenesis with FoldXβ57Updated 3 weeks ago
- A generative latent variable model for biological sequence families.β232Updated 3 years ago
- Fast protein structure searching or your money backβ109Updated 4 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteinsβ154Updated 3 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.β65Updated 5 months ago
- Neural Networks for Protein Sequence Alignmentβ124Updated 9 months ago
- Contact map alignmentβ41Updated 4 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.β34Updated 3 years ago
- Fast indexing and search of discontinuous motifs in protein structuresβ65Updated this week
- An ultra-high-performance protein-protein docking for heterogeneous supercomputersβ63Updated last year
- Singularity recipe for AlphaFoldβ36Updated 8 months ago
- AlphaFill is an algorithm based on sequence and structure similarity that βtransplantsβ missing compounds to the AlphaFold models. By addβ¦β101Updated 3 months ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Predictionβ17Updated 6 years ago
- Antibody Numbering and Antigen Receptor ClassIficationβ228Updated last year