BioJulia / BioFmtSpecimensLinks
A collection of bioinformatics file format specimens to test against
☆47Updated 5 years ago
Alternatives and similar repositories for BioFmtSpecimens
Users that are interested in BioFmtSpecimens are comparing it to the libraries listed below
Sorting:
- CRyPTIC data processing pipelines☆34Updated 11 months ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Graph based multi genome aligner☆47Updated 3 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆31Updated 3 weeks ago
- A web wrapper for GeneValidator☆11Updated 4 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 2 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆58Updated last month
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 7 months ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆30Updated 9 years ago
- ☆26Updated 4 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 4 months ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- A collection of publications on comparison of high-throughput sequencing technologies.☆28Updated 5 months ago
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆45Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆46Updated 6 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆110Updated 8 months ago
- 🗻 Visualization of genome/gene sequence synteny☆39Updated last year
- sfasta☆35Updated last month
- Source code for SimBac, a bacterial genome simulator☆13Updated 9 months ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated last year
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆94Updated 7 months ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago