Alternatives and similar repositories for pbcore

Users that are interested in pbcore are comparing it to the libraries listed below

• sequencing / NxTrim
  Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
  ☆54Updated 7 years ago
• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆45Updated last year
• guyduche / Blast2Bam
  Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
  ☆48Updated 4 years ago
• jts / nanopore-paper-analysis
  Code for nanopore paper
  ☆33Updated 10 years ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆56Updated 8 years ago
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆72Updated 9 years ago
• Cibiv / Teaser
  A tool to benchmark mappers and different parameters within minutes
  ☆44Updated 6 years ago
• benedictpaten / marginAlign
  UCSC Nanopore
  ☆43Updated 5 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆63Updated 7 years ago
• arq5x / nanopore-scripts
  Various scripts and recipes for working with nanopore data
  ☆34Updated 9 years ago
• mgymrek / pybamview
  Browser based application for viewing bam alignments
  ☆56Updated 8 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆67Updated 2 years ago
• jhhung / PEAT
  An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.
  ☆22Updated 4 years ago
• nanoporetech / wub
  Tools and software library developed by the ONT Applications group
  ☆63Updated 4 years ago
• jts / nanocorrect
  Experimental pipeline for correcting nanopore reads
  ☆39Updated 8 years ago
• sirselim / guppy_parameter_optimiser
  A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
  ☆30Updated 3 years ago
• PacificBiosciences / kineticsTools
  Tools for detecting DNA modifications from single molecule, real-time sequencing data
  ☆25Updated 3 years ago
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 4 years ago
• TGAC / NanoOK
  Analysis tool for Nanopore sequencing data
  ☆33Updated 6 years ago
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated 10 months ago
• cschin / Write_A_Genome_Assembler_With_IPython
  The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python
  ☆31Updated 7 years ago
• vibansal / hapcut
  program for haplotype phasing from sequence reads and related tools
  ☆25Updated 6 years ago
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 3 years ago
• ekg / bamaddrg
  adds sample names and read-group (RG) tags to BAM alignments
  ☆51Updated 4 years ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆78Updated 11 months ago
• eclarke / komplexity
  A method of assessing sequence complexity based on kmer frequencies
  ☆32Updated 7 years ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆56Updated last year
• jgurtowski / nanocorr
  Error correction for Oxford Nanopore data
  ☆47Updated 4 years ago
• tommyau / bamclipper
  Remove primer sequence from BAM alignments by soft-clipping
  ☆31Updated 5 years ago