A Python library for reading and writing PacBio® data files
☆41May 21, 2026Updated 3 weeks ago
Alternatives and similar repositories for pbcore
Users that are interested in pbcore are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 4 years ago
- ☆28Dec 22, 2025Updated 5 months ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆17Feb 1, 2021Updated 5 years ago
- The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.☆18Feb 26, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Error correction and variant calling algorithm for nanopore sequencing☆26Apr 23, 2016Updated 10 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆31Jan 19, 2021Updated 5 years ago
- A library for next generation genomics in Python 3☆18Jun 7, 2018Updated 8 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Jun 10, 2021Updated 5 years ago
- Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data☆18Aug 13, 2014Updated 11 years ago
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Mar 4, 2022Updated 4 years ago
- ☆36Aug 13, 2020Updated 5 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49May 25, 2021Updated 5 years ago
- A list of weak Bacterial assemblies in GenBank☆18Aug 3, 2017Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- High-performance error correction for Illumina resequencing data☆74May 31, 2016Updated 10 years ago
- Minimal docker image for bwa. Not developed any more.☆11Apr 26, 2015Updated 11 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆27Sep 7, 2019Updated 6 years ago
- MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities☆98Jun 27, 2022Updated 3 years ago
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Python bindings to minimap2☆16Sep 18, 2017Updated 8 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆298May 9, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Making Metagenomes Manageable☆12Apr 4, 2017Updated 9 years ago
- SVG based genome viewer written in javascript using D3☆33Jul 12, 2015Updated 10 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- Population-scale detection of novel sequence insertions☆28Aug 16, 2022Updated 3 years ago
- ☆18Mar 5, 2017Updated 9 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆112Updated this week
- Process SMRT sequencing kinetic summary to predict regional methylation on large genome☆13Dec 4, 2018Updated 7 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆22May 8, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Dec 6, 2023Updated 2 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Jun 5, 2020Updated 6 years ago
- ☆30Jul 10, 2019Updated 6 years ago
- Github Gists from the command line. On MAC OSX, it (will be) an Alfred Workflow!☆11Dec 20, 2020Updated 5 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆381Apr 10, 2022Updated 4 years ago
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 9 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago