PacificBiosciences / pbcore
A Python library for reading and writing PacBio® data files
☆39Updated last week
Alternatives and similar repositories for pbcore:
Users that are interested in pbcore are comparing it to the libraries listed below
- De novo transcriptome assembler for short reads☆62Updated 6 years ago
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Maximum likelihood demultiplexing☆46Updated 2 weeks ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Tools and software library developed by the ONT Applications group☆62Updated 4 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- UCSC Nanopore☆43Updated 5 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Linked-Read Alignment Tool☆27Updated 5 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 8 years ago
- simple library for dealing with SAM cigar strings☆40Updated 4 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated this week
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 5 months ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- ☆46Updated 3 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆53Updated 3 months ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 3 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated 3 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago