PacificBiosciences / pbcoreLinks
A Python library for reading and writing PacBio® data files
☆41Updated 2 months ago
Alternatives and similar repositories for pbcore
Users that are interested in pbcore are comparing it to the libraries listed below
Sorting:
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- 10x Genomics Reads Simulator☆46Updated last year
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Maximum likelihood demultiplexing☆50Updated 9 months ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 2 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆34Updated 2 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 5 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Automatically optimise three of Velvet's assembly parameters.☆48Updated 3 years ago