PacificBiosciences / pbcore
A Python library for reading and writing PacBio® data files
☆39Updated 2 months ago
Alternatives and similar repositories for pbcore:
Users that are interested in pbcore are comparing it to the libraries listed below
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- High-performance error correction for Illumina resequencing data☆70Updated 8 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆46Updated 3 years ago
- Maximum likelihood demultiplexing☆47Updated 2 months ago
- A versatile toolkit for k-mers with taxonomic information☆77Updated 8 months ago
- The MG-RAST Backend -- the API server☆45Updated last year
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)☆40Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 2 months ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- A collection of modules and sub-workflows for Nextflow☆26Updated 2 weeks ago
- small RNA analysis from NGS data☆37Updated 7 months ago
- Protein Alignment and Detection Interface☆61Updated last year
- de novo virus assembler of Illumina paired reads☆55Updated 3 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Benchmark datasets for WGS analysis☆37Updated 5 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- De novo Extraction of Strains from MetAgeNomes☆68Updated 4 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Visualize whole genome alignments as linear maps☆72Updated 7 months ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- An awk-like VCF parser☆56Updated last year