☆52Mar 30, 2026Updated 2 weeks ago
Alternatives and similar repositories for VarNet
Users that are interested in VarNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Somatic Variant Call for ctDNA☆12Mar 1, 2016Updated 10 years ago
- ☆22Feb 5, 2025Updated last year
- ☆15Aug 11, 2025Updated 8 months ago
- Somatic point mutation caller☆34Jan 7, 2026Updated 3 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Jul 1, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Sep 1, 2022Updated 3 years ago
- meta-analysis of new and published human WAT single cell data☆15Mar 12, 2025Updated last year
- ☆11Sep 22, 2021Updated 4 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …☆304Mar 5, 2026Updated last month
- NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection☆176Dec 23, 2021Updated 4 years ago
- CNV analysis workflow code for the manuscript☆13Jun 22, 2020Updated 5 years ago
- Python language bindings for bwa☆12Mar 27, 2026Updated 2 weeks ago
- HGNC Comparison of Orthology Predictions (HCOP)☆15Mar 22, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- Codes used for all the data analysis steps in the paper "Single-cell transcriptomics identifies an effectorness gradient shaping the resp…☆16Apr 15, 2020Updated 5 years ago
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 3 years ago
- Deep learning-based prediction of regulatory genome sequences☆12Apr 20, 2020Updated 5 years ago
- ☆11Jun 13, 2024Updated last year
- "Independent Component Analysis of BIg Omics Data"☆13Nov 3, 2022Updated 3 years ago
- a tool for summarizing and integrating gene-set analysis results☆16Aug 14, 2024Updated last year
- Filters for Next Generation Sequencing☆12Oct 31, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆77Feb 26, 2026Updated last month
- RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection☆29Oct 1, 2020Updated 5 years ago
- ☆25Feb 20, 2025Updated last year
- Recreation of the DNA Sequence Classification Paper☆12Oct 27, 2016Updated 9 years ago
- ☆13Sep 6, 2022Updated 3 years ago
- Here I show how to use Convolutional Neural Networks (CNNs) for Ancient DNA analysis☆15Apr 24, 2019Updated 6 years ago
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- ☆51Jun 27, 2019Updated 6 years ago
- Get the consensus sequences from SAM (and BAM) files, ignoring the reference☆13Oct 27, 2019Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆11Mar 16, 2020Updated 6 years ago
- cfSNV: An R tool of sensitively detecting tumor mutations from cell-free DNA in blood☆14Apr 29, 2023Updated 2 years ago
- DNN-based small variant caller☆12May 2, 2022Updated 3 years ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Apr 17, 2020Updated 5 years ago
- Tumour-only somatic mutation calling using long reads☆28Oct 28, 2024Updated last year
- Sequence-to-function deep learning frameworks for engineered riboregulators☆14Aug 3, 2023Updated 2 years ago
- A machine learning framework to predict antibiotic resistance traits and yet unknown genes underlying resistance to specific antibiotics …☆15Oct 6, 2022Updated 3 years ago