skandlab / VarNet
☆27Updated last year
Alternatives and similar repositories for VarNet:
Users that are interested in VarNet are comparing it to the libraries listed below
- ☆38Updated 6 months ago
- ☆38Updated 5 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆42Updated this week
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆28Updated 2 months ago
- Annotation and segmentation of MAS-seq data☆20Updated last year
- ☆41Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last month
- Clinical interpretation of somatic mutations in cancer☆45Updated last month
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆87Updated this week
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 8 months ago
- ☆46Updated 3 years ago
- Evaluate the performances (precision and recall) of structural variation (SV) callers☆34Updated 5 months ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆22Updated 2 months ago
- IDR☆31Updated 2 years ago
- ☆23Updated 6 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆36Updated 3 months ago
- Fork of the Polysolver project☆31Updated 5 years ago
- VEP Plugin to annotate high-impact five prime UTR variants☆26Updated 7 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆78Updated 4 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- Long-read Isoform Quantification and Analysis☆39Updated last week
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated this week
- Tools for making plots of genomic datasets in a genome-browser-like format☆31Updated 3 months ago
- ☆21Updated last week
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆27Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆24Updated last month
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆19Updated 2 weeks ago