Alternatives and similar repositories for orca:

Users that are interested in orca are comparing it to the libraries listed below

• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆75Updated 10 months ago
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆63Updated 2 years ago
• VRam142 / combinatorialHiC
  Scripts + resources for analyzing combinatorial Hi-C data
  ☆30Updated 5 years ago
• ma-compbio / Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
  ☆86Updated 7 months ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆102Updated 2 years ago
• LieberInstitute / INTERACT
  ☆11Updated 2 years ago
• arnavmdas / epiphany
  ☆10Updated last year
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆41Updated 5 months ago
• tanlongzhi / dip-c
  Tools to analyze Dip-C (or other 3C/Hi-C) data
  ☆63Updated 5 months ago
• ernstlab / full_stack_ChromHMM_annotations
  Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes
  ☆35Updated 10 months ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆56Updated last month
• gaolabtools / scNanoGPS
  Single cell Nanopore sequencing data for Genotype and Phenotype
  ☆52Updated last week
• tkzeng / Pangolin
  Pangolin is a deep-learning method for predicting splice site strengths.
  ☆73Updated 10 months ago
• Papatheodorou-Group / BENGAL
  Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
  ☆37Updated last year
• mostafavilabuw / EnformerAssessment
  ☆21Updated 8 months ago
• jmschrei / tfmodisco-lite
  A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
  ☆73Updated this week
• BUStools / bustools
  Tools for working with BUS files
  ☆98Updated 2 weeks ago
• tariks / peakachu
  Genome-wide contact analysis using sklearn
  ☆64Updated last year
• calico / baskerville
  Machine learning methods for DNA sequence analysis.
  ☆43Updated last week
• xryanglab / RiboMiner
  a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
  ☆17Updated 3 months ago
• 4dn-dcic / hic2cool
  Lightweight converter between hic and cool contact matrices.
  ☆73Updated 9 months ago
• lhqing / ALLCools
  Toolkit for single-cell DNA methylation analysis.
  ☆42Updated last month
• JinLabBioinfo / HiCorr
  HiCorr: a Hi-C data bias-correction pipeline
  ☆28Updated last month
• yal054 / epiformer
  ☆26Updated 3 weeks ago
• mdozmorov / scHiC_notes
  Notes on single-cell Hi-C technologies, tools, and data
  ☆78Updated 6 months ago
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆116Updated 8 months ago
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆94Updated 2 months ago
• YeoLab / eCLIP
  ☆37Updated 2 years ago
• dejunlin / hicrep
  Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support
  ☆38Updated last year
• shtoneyan / gopher
  Toolset for training quantitative sequence to function models.
  ☆23Updated last year