cancerit / dockstore-cgpwgsView external linksLinks
Dockstore implementation of CGP core WGS analysis
☆30Jun 8, 2020Updated 5 years ago
Alternatives and similar repositories for dockstore-cgpwgs
Users that are interested in dockstore-cgpwgs are comparing it to the libraries listed below
Sorting:
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Jan 15, 2020Updated 6 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Sep 3, 2019Updated 6 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- Snakemake workflow for somatic mutation detection without matched normal samples☆13Mar 4, 2023Updated 2 years ago
- TCGA BLCA tmb prediction by Hongming Xu☆13Nov 1, 2020Updated 5 years ago
- ☆11Oct 7, 2025Updated 4 months ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- ☆13Dec 16, 2021Updated 4 years ago
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"☆14Oct 17, 2024Updated last year
- Battenberg R package for subclonal copynumber estimation☆95Feb 10, 2026Updated last week
- PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways☆63Mar 18, 2024Updated last year
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆203Jan 5, 2026Updated last month
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated last year
- MHC class II binding prediction☆14Dec 27, 2022Updated 3 years ago
- Structural variant and indel caller for mapped sequencing data☆458Oct 11, 2025Updated 4 months ago
- Analysis for svaseq paper☆20Aug 20, 2014Updated 11 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- A tool for timing complex copy number gains in cancer.☆20Dec 4, 2025Updated 2 months ago
- Documenting usage and experience with bioinformatic tools☆40Sep 11, 2015Updated 10 years ago
- ☆19Nov 22, 2022Updated 3 years ago
- ☆21Aug 11, 2021Updated 4 years ago
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- non-redundant, compressed, journalled, file-based storage for biological sequences☆47Nov 10, 2025Updated 3 months ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 2 years ago
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- Bioinformatics learning (for high performance computing, big data, and machine learning)☆19Jun 8, 2017Updated 8 years ago
- Subclonal Hierarchy Inference from Somatic Mutations☆21Feb 25, 2025Updated 11 months ago
- Code accompanying The Evolutionary history of 2,658 cancers☆47Apr 16, 2021Updated 4 years ago
- CNV screening and annotation tool☆25Oct 31, 2016Updated 9 years ago
- Accompanying analysis code for the FRASER manuscript☆25Aug 27, 2020Updated 5 years ago
- Battenberg algorithm and associated implementation script☆53Oct 21, 2020Updated 5 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆35Jan 6, 2025Updated last year
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Dec 20, 2022Updated 3 years ago
- ☆30Mar 2, 2023Updated 2 years ago
- Tumor Mutational Burden☆64Feb 3, 2026Updated 2 weeks ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆71Feb 6, 2026Updated last week