cancerit / dockstore-cgpwgs
Dockstore implementation of CGP core WGS analysis
β30Updated 4 years ago
Alternatives and similar repositories for dockstore-cgpwgs:
Users that are interested in dockstore-cgpwgs are comparing it to the libraries listed below
- Bayesian mixture models for estimating and clustering cancer cell fractionsβ24Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.β50Updated 5 years ago
- πΊ Exploring novel tumor epitope identificationβ35Updated 4 years ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.β4Updated last year
- Detect somatic variants from tumor and normal WGS/WXS dataβ15Updated last month
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networksβ28Updated this week
- Framework for Metastatic And Clonal History INtegrative Analysisβ36Updated 4 years ago
- β43Updated 6 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq dataβ26Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.β57Updated 4 months ago
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing dataβ11Updated 4 years ago
- β23Updated 6 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotypeβ50Updated this week
- A continually expanding collection of RNA-seq toolsβ48Updated 6 months ago
- Burden testing against public controlsβ50Updated last year
- Epimap processing and analysis code repositoryβ33Updated 2 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our websiteβ78Updated 4 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq dataβ65Updated 5 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen predictionβ71Updated 3 months ago
- FRASER - Find RAre Splicing Events in RNA-seqβ44Updated last month
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alleβ¦β44Updated 2 years ago
- MutSig2CV from Lawrence et al. 2014β31Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumoursβ29Updated 3 weeks ago
- Snakemake-based workflow for detecting structural variants in genomic dataβ80Updated last month
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19β73Updated 8 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing dataβ34Updated 4 months ago
- Documenting usage and experience with bioinformatic toolsβ41Updated 9 years ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflowsβ26Updated 5 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencingβ70Updated 4 years ago
- Code accompanying The Evolutionary history of 2,658 cancersβ46Updated 3 years ago