cancerit / dockstore-cgpwgsLinks
Dockstore implementation of CGP core WGS analysis
☆30Updated 5 years ago
Alternatives and similar repositories for dockstore-cgpwgs
Users that are interested in dockstore-cgpwgs are comparing it to the libraries listed below
Sorting:
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- A continually expanding collection of RNA-seq tools☆51Updated 10 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆72Updated 5 months ago
- ☆10Updated 5 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆19Updated 3 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆77Updated 2 months ago
- Clinical interpretation of somatic mutations in cancer☆47Updated 6 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆54Updated 3 months ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆46Updated last year
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Updated 2 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆61Updated 8 months ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 5 years ago
- ☆38Updated 5 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆85Updated 3 months ago
- Universal RObust Peak Annotator☆16Updated last year
- ☆39Updated 2 months ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- Framework for Metastatic And Clonal History INtegrative Analysis☆36Updated 4 years ago
- A rust framework to make using alevin-fry even simpler☆57Updated 4 months ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Updated 3 months ago
- Workflows for converting between sequence data formats☆38Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Updated 2 years ago
- ☆76Updated 4 months ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago