cancerit / dockstore-cgpwgsLinks
Dockstore implementation of CGP core WGS analysis
☆30Updated 5 years ago
Alternatives and similar repositories for dockstore-cgpwgs
Users that are interested in dockstore-cgpwgs are comparing it to the libraries listed below
Sorting:
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Updated 2 years ago
- ☆38Updated 5 years ago
- Framework for Metastatic And Clonal History INtegrative Analysis☆36Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 6 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data☆13Updated 5 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆68Updated 3 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- Burden testing against public controls☆50Updated last year
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 2 months ago
- Detect somatic variants from tumor and normal WGS/WXS data☆18Updated last month
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 7 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- ☆10Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- ☆44Updated 6 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Fork of the Polysolver project☆31Updated 5 years ago
- SV clustering☆28Updated 3 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 11 months ago
- ☆23Updated 6 years ago
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- A continually expanding collection of RNA-seq tools☆50Updated 8 months ago