slimsuite / SLiMSuiteLinks
Open source short linear motif discovery and sequence analysis
☆24Updated 10 months ago
Alternatives and similar repositories for SLiMSuite
Users that are interested in SLiMSuite are comparing it to the libraries listed below
Sorting:
- Find common blocks and differences between DNA sequences☆42Updated 3 months ago
- Next-generation PRALINE sequence alignment program.☆10Updated 6 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated last month
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- An R package to call oomycete effectors☆11Updated last year
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Desktop application for colouring/shading sequence alignments☆29Updated 2 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆33Updated last year
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 months ago
- ☆31Updated 3 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆27Updated 7 months ago
- antimicrobial peptide prediction in R☆33Updated 7 months ago
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆59Updated 4 years ago
- Bacterial Annotation by Learned Representation of Genes☆57Updated 4 years ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆17Updated last year
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆56Updated 4 months ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated this week
- ☆14Updated 9 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆32Updated 2 years ago
- Python bindings for the TaxonKit library☆41Updated last month
- Protein Alignment and Detection Interface☆61Updated last year
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- Examples for gget (https://github.com/pachterlab/gget).☆38Updated 2 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 5 months ago
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆20Updated 3 weeks ago
- Simple Python program to perform codon optimization or heterology calculations.☆10Updated 4 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 months ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated 2 weeks ago