PulverCyril / craTEsLinks
Estimate the cis-regulatory activity of transposable element (TEs) subfamilies
☆10Updated last year
Alternatives and similar repositories for craTEs
Users that are interested in craTEs are comparing it to the libraries listed below
Sorting:
- ☆61Updated 10 months ago
- ☆26Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 10 months ago
- ☆37Updated 5 years ago
- 4C-seq processing pipeline☆23Updated 2 months ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆26Updated 4 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated last week
- ☆43Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 6 years ago
- Tutorial Website☆59Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆48Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆45Updated 2 months ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- ☆22Updated 5 months ago
- Reconstruction of focal amplifications with long reads☆21Updated last week
- An analysis toolkit for single-cell methylation sequencing data☆20Updated this week
- code associated with crane-nature-2015, 10.1038/nature14450☆35Updated 9 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆20Updated 3 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆43Updated this week
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 7 months ago
- ☆19Updated 10 months ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆23Updated 2 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated 3 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆27Updated last month