PulverCyril / craTEsLinks
Estimate the cis-regulatory activity of transposable element (TEs) subfamilies
☆10Updated last year
Alternatives and similar repositories for craTEs
Users that are interested in craTEs are comparing it to the libraries listed below
Sorting:
- ☆63Updated last week
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆29Updated 7 months ago
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated 2 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- Quantification of transposable element expression using RNA-seq☆75Updated last year
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- Allele-specific alignment sorting☆58Updated 2 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆44Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- ☆59Updated 2 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 2 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- ☆96Updated last month
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- ☆46Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆111Updated 4 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆136Updated last month
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆71Updated last year
- HiC uniform processing pipeline☆61Updated last year
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated last week
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆46Updated 2 months ago
- Tool comparison for detecting differentially expressed individual transposable elements☆11Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 7 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago