Alternatives and similar repositories for MetaGWASToolKit

Users that are interested in MetaGWASToolKit are comparing it to the libraries listed below

• roman-tremmel / ggfastman
  Fast manhattenplots using ggplot2
  ☆9Updated last year
• FinucaneLab / fine-mapping-inf
  Fine-mapping with infinitesimal effects
  ☆16Updated 2 months ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆30Updated 2 years ago
• GP2code / GP2-Multiancestry-metaGWAS
  ☆11Updated 2 years ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• zhilizheng / qsubshcom
  qsub command for serveral cluster engine
  ☆14Updated 6 months ago
• derekmichaelwright / gwaspr
  An R package for plotting GWAS results from the GAPIT package
  ☆12Updated 2 weeks ago
• bhattacharya-a-bt / isotwas
  ☆23Updated 2 weeks ago
• jinghuazhao / INF
  SCALLOP-INF analysis
  ☆20Updated 10 months ago
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆23Updated 8 months ago
• yuanzhongshang / GIFT
  ☆20Updated 8 months ago
• ipdgc / Manhattan-Plotter
  This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3
  ☆13Updated 6 years ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆18Updated 2 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆22Updated 4 years ago
• hakyimlab / PredictDB_Pipeline_GTEx_v7
  PredictDB Pipeline for GTEx v7 data
  ☆17Updated 2 years ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆16Updated 4 years ago
• vargasliqin / GTEx_edQTL
  ☆9Updated 2 years ago
• swvanderlaan / GWASToolKit
  A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
  ☆18Updated 9 months ago
• gusevlab / stratAS
  🌓 Allele specific analyses across cell states and conditions
  ☆10Updated 2 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆33Updated 4 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆38Updated 8 months ago
• Shicheng-Guo / HowtoBook
  Readme
  ☆10Updated 5 years ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆36Updated 10 months ago
• jianyangqt / osca
  ☆20Updated 2 years ago
• hakha-most / gwas_eqtl
  ☆17Updated last year
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆26Updated 2 years ago
• EMO-Consortium / GeneticCorrelation
  ☆11Updated last year
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• iaaaka / evo-devo
  ☆12Updated 4 years ago