Alternatives and similar repositories for MetaGWASToolKit

Users that are interested in MetaGWASToolKit are comparing it to the libraries listed below

• roman-tremmel / ggfastman
  Fast manhattenplots using ggplot2
  ☆9Updated last year
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆18Updated 2 years ago
• hakyimlab / PredictDB_Pipeline_GTEx_v7
  PredictDB Pipeline for GTEx v7 data
  ☆17Updated 2 years ago
• FinucaneLab / fine-mapping-inf
  Fine-mapping with infinitesimal effects
  ☆16Updated last month
• yuanzhongshang / GIFT
  ☆20Updated 8 months ago
• GP2code / GP2-Multiancestry-metaGWAS
  ☆10Updated 2 years ago
• statgen / pheweb-rg-pipeline
  Genetic correlation calculation pipeline via summary statistics for PheWeb
  ☆13Updated 6 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆33Updated 4 years ago
• derekmichaelwright / gwaspr
  An R package for plotting GWAS results from the GAPIT package
  ☆12Updated 2 weeks ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 2 years ago
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆22Updated 7 years ago
• jianyangqt / osca
  ☆20Updated last year
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• swvanderlaan / GWASToolKit
  A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
  ☆18Updated 8 months ago
• ipdgc / Manhattan-Plotter
  This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3
  ☆12Updated 6 years ago
• liusihan / population-compare-pipeline
  Analysis pipelines for QTL discovery and GWAS signals interpretation
  ☆9Updated 10 months ago
• atgu / GWASpy
  GWAS QC, PCA, haplotype phasing, genotype imputation
  ☆18Updated 2 months ago
• jinghuazhao / INF
  SCALLOP-INF analysis
  ☆20Updated 10 months ago
• hakha-most / gwas_eqtl
  ☆16Updated last year
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆22Updated 4 years ago
• EMO-Consortium / GeneticCorrelation
  ☆11Updated last year
• bhattacharya-a-bt / isotwas
  ☆23Updated 6 months ago
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆15Updated 4 years ago
• SUwonglab / rss-net
  RSS-NET: Regression with Summary Statistics exploiting Network Topology
  ☆19Updated 2 months ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆29Updated 9 months ago
• naim-panjwani / LocusFocus
  Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
  ☆10Updated 6 months ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆28Updated last year