singlecellomics / ursaLinks
One-Stop Solution to Single-Cell Multi-Omics Analysis
☆7Updated last year
Alternatives and similar repositories for ursa
Users that are interested in ursa are comparing it to the libraries listed below
Sorting:
- cell type specific, trait-associated gene regulation☆27Updated 2 months ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated last year
- Pipeline for designing custom probes against human genes☆17Updated 7 months ago
- An R package for performing cell typing in SMI and other single cell data☆37Updated last month
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated 11 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆48Updated 7 months ago
- ☆18Updated last year
- Cell-type Relationship Analysis Workflow Done Across Distances☆32Updated 2 weeks ago
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆13Updated 7 months ago
- ☆14Updated 4 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 5 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last month
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆23Updated 3 weeks ago
- Tools for analyzing Slide-seq data☆31Updated last year
- ☆17Updated last month
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 7 months ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated last year
- iterative clustering pipeline of big single cell datasets.☆32Updated last month
- ☆39Updated 9 months ago
- ☆52Updated 2 years ago
- ☆32Updated 5 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆37Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆16Updated 2 years ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆15Updated last year
- ☆34Updated last year
- ☆49Updated 10 months ago