infphilo / tophatLinks
Spliced read mapper for RNA-Seq
☆21Updated 7 years ago
Alternatives and similar repositories for tophat
Users that are interested in tophat are comparing it to the libraries listed below
Sorting:
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆170Updated last year
- Software program for checking sample matching for NGS data☆135Updated last year
- ☆152Updated 3 months ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆131Updated last year
- Analysis of Chromosome Conformation Capture data (Hi-C)☆101Updated 2 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 3 months ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated last month
- Scripts for next generation sequencing☆49Updated 5 years ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆47Updated 2 years ago
- microRNA profiling pipeline☆79Updated 3 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆150Updated last month
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆136Updated 3 weeks ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆172Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆142Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆89Updated 3 years ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆157Updated 3 weeks ago
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆99Updated 3 months ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆107Updated 4 years ago
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- RNA-Seq analysis workflow☆104Updated 4 years ago
- Reference data: BED files, genes, transcripts, variations.☆85Updated 7 years ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- Fast alignment and preprocessing of chromatin profiles☆203Updated last week
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago