infphilo / tophat
Spliced read mapper for RNA-Seq
☆22Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for tophat
- Allele-specific alignment sorting☆53Updated last year
- Reference data: BED files, genes, transcripts, variations.☆81Updated 6 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆79Updated 2 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆46Updated 5 years ago
- release version☆47Updated 2 years ago
- Scripts for next generation sequencing☆47Updated 5 years ago
- Genomic Interactive Visualization Engine☆145Updated last year
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- FEELnc : FlExible Extraction of LncRNA☆82Updated 2 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆45Updated 10 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆138Updated 2 months ago
- Check strandedness of RNA-Seq fastq files☆115Updated 2 years ago
- Automatically exported from code.google.com/p/ea-utils☆95Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆61Updated 3 months ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆74Updated 3 weeks ago
- ☆70Updated 6 months ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆92Updated 3 years ago
- ☆135Updated 2 months ago
- Analysis pipeline for the GUIDE-seq assay.☆77Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year
- RNA-Seq analysis workflow☆104Updated 3 years ago
- circular RNA analysis toolset☆76Updated 2 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- ☆103Updated last year
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆31Updated last year
- HiC uniform processing pipeline☆57Updated last year
- Software for Quantifying Interspersed Repeat Expression☆49Updated 2 years ago
- ☆51Updated 6 years ago
- ☆53Updated 3 years ago