Spliced read mapper for RNA-Seq
☆22May 24, 2018Updated 7 years ago
Alternatives and similar repositories for tophat
Users that are interested in tophat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆321Mar 31, 2020Updated 6 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Python implementation of TEISER also capable of using SHAPE structural probing data☆12Jan 7, 2025Updated last year
- Testing hybridization using species trees☆10Aug 25, 2017Updated 8 years ago
- ALignment Transformation EnviRonment☆11May 8, 2018Updated 8 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 5 months ago
- Fast, accurate species tree estimation.☆12Aug 29, 2024Updated last year
- circular RNA quantification tools☆31Jun 17, 2024Updated last year
- Spliced read mapper for RNA-Seq☆92Jul 9, 2023Updated 2 years ago
- Repo for a workshops and presentations about ROS2 and Python☆12Updated this week
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆14Updated this week
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- ☆13Dec 7, 2020Updated 5 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions☆13Jun 25, 2024Updated last year
- Plot stacked logos for single or multiple DNA, RNA and amino acid sequence☆18Apr 29, 2026Updated last week
- ☆18Aug 28, 2024Updated last year
- This repo contains tutorials for different NGS analysis methods☆13Nov 29, 2021Updated 4 years ago
- AIDE: annotation-assisted isoform discovery and quantification from RNA-seq data☆14Aug 6, 2022Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 11 years ago
- Simurai’s site as a Harp boilerplate.☆21Dec 11, 2015Updated 10 years ago
- A python library for checking if an email is issued by an academic institution. Useful for granting discounts, etc to academic users.☆15Feb 16, 2016Updated 10 years ago
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆17Jul 13, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Makes distinct TSS of each gene from a Gencode annotation☆10Oct 19, 2016Updated 9 years ago
- full taxonomer cython repository☆22Dec 1, 2019Updated 6 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Apr 25, 2018Updated 8 years ago
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 8 months ago
- Automatically exported from code.google.com/p/densitree☆30Jul 27, 2025Updated 9 months ago
- phylogenetic networks using ggplot2 and ggtree☆13Dec 24, 2024Updated last year
- Ncdu is a disk usage analyzer with an ncurses interface. Tweaked to shorten timestamp display column, for use on small screens (%y-%m-%d …☆12Feb 10, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆214May 14, 2020Updated 5 years ago
- Simple web browser to visualize HiC tracks☆19Dec 12, 2019Updated 6 years ago
- Workshop introducing to Pandas☆16Aug 17, 2017Updated 8 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆130Apr 12, 2020Updated 6 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- binned motif enrichment analysis and visualisation☆45Apr 29, 2026Updated last week
- Prediction pipeline to generate prognosis predictors for Ebola Virus Disease☆12Feb 22, 2016Updated 10 years ago