Spliced read mapper for RNA-Seq
☆22May 24, 2018Updated 8 years ago
Alternatives and similar repositories for tophat
Users that are interested in tophat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆323Mar 31, 2020Updated 6 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 8 months ago
- ALignment Transformation EnviRonment☆12May 8, 2018Updated 8 years ago
- Repo for a workshops and presentations about ROS2 and Python☆12Jun 13, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- circular RNA quantification tools☆31Jun 17, 2024Updated 2 years ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- Spliced read mapper for RNA-Seq☆92Jul 9, 2023Updated 3 years ago
- Official repository for the paper "Evaluating variant effect prediction across viruses"☆21Mar 30, 2026Updated 3 months ago
- R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions☆13Jun 25, 2024Updated 2 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- ☆18Aug 28, 2024Updated last year
- ☆19Apr 14, 2024Updated 2 years ago
- ☆13Dec 7, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- Plot stacked logos for single or multiple DNA, RNA and amino acid sequence☆17Apr 29, 2026Updated 2 months ago
- This repo contains tutorials for different NGS analysis methods☆13Nov 29, 2021Updated 4 years ago
- A python library for checking if an email is issued by an academic institution. Useful for granting discounts, etc to academic users.☆15Feb 16, 2016Updated 10 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 11 years ago
- AIDE: annotation-assisted isoform discovery and quantification from RNA-seq data☆16Aug 6, 2022Updated 3 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆22Nov 20, 2022Updated 3 years ago
- full taxonomer cython repository☆22Dec 1, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Apr 25, 2018Updated 8 years ago
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 3 weeks ago
- Simple web browser to visualize HiC tracks☆19Dec 12, 2019Updated 6 years ago
- phylogenetic networks using ggplot2 and ggtree☆13Dec 24, 2024Updated last year
- Automatically exported from code.google.com/p/densitree☆31Jul 27, 2025Updated last year
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆213May 14, 2020Updated 6 years ago
- Ncdu is a disk usage analyzer with an ncurses interface. Tweaked to shorten timestamp display column, for use on small screens (%y-%m-%d …☆12Feb 10, 2020Updated 6 years ago
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- binned motif enrichment analysis and visualisation☆48Jun 13, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆14Jul 12, 2024Updated 2 years ago
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆16Updated this week
- Simple BitTorrent client, currently supporting BEP3 specification.☆11Aug 2, 2023Updated 2 years ago
- Makes distinct TSS of each gene from a Gencode annotation☆10Oct 19, 2016Updated 9 years ago
- Plann: a command-line application for annotating plastome sequences☆13Aug 5, 2022Updated 3 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Mar 1, 2019Updated 7 years ago
- mdust from DFCI Gene Indices Software Tools (archived for a historical record only)☆11Jan 2, 2015Updated 11 years ago