EnvGen / snakemake-workflowsLinks
Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.
☆21Updated 7 years ago
Alternatives and similar repositories for snakemake-workflows
Users that are interested in snakemake-workflows are comparing it to the libraries listed below
Sorting:
- An interactive web-tool for RNA-seq analysis☆70Updated 10 months ago
- ☆73Updated 3 years ago
- Reduce + Visualize Gene Ontology☆35Updated 4 months ago
- R package for genomic feature analysis and visualization☆79Updated 8 months ago
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- ☆35Updated this week
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- Microbiome analysis☆53Updated last week
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- ☆33Updated 7 months ago
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆55Updated 2 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 2 months ago
- ☆23Updated last month
- Intro to Shell for Bioinformatics - with STG examples☆28Updated 9 years ago
- Genomic Interactive Visualization Engine☆146Updated 2 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 6 months ago
- An efficient way to guess the library type of your RNA-Seq data.☆33Updated 3 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Visualizing transcript structure and annotation using ggplot2☆163Updated last year
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆88Updated 10 months ago
- An R interface to the MEME Suite☆53Updated 6 months ago
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆77Updated last month
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- 𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of …☆66Updated 3 months ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- BigWig and BAM utilities☆99Updated last year