EnvGen / snakemake-workflows
Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.
☆21Updated 6 years ago
Alternatives and similar repositories for snakemake-workflows:
Users that are interested in snakemake-workflows are comparing it to the libraries listed below
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆31Updated 2 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated last month
- Merge fastq files split over lanes☆20Updated 7 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 2 weeks ago
- ☆21Updated 8 months ago
- ☆29Updated 6 months ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 5 years ago
- R package for genomic feature analysis and visualization☆76Updated 3 weeks ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 3 weeks ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Evolutionary Transcriptomics with R☆43Updated this week
- ☆27Updated last year
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated last month
- NGSNGS: Next generation simulator for next generation sequencing data☆50Updated 5 months ago
- Transcript quantification import with automatic metadata detection☆68Updated 3 months ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 weeks ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- interactive plots for differential expression analysis☆32Updated last month
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- An interactive web-tool for RNA-seq analysis☆68Updated 2 months ago
- ☆23Updated 6 years ago