Alternatives and similar repositories for NGS-longreads-training:

Users that are interested in NGS-longreads-training are comparing it to the libraries listed below

• js2264 / tidyCoverage
  ☆21Updated 6 months ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆42Updated 2 months ago
• Novartis / easyTrackHubs
  This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…
  ☆28Updated 10 months ago
• NBISweden / GUESSmyLT
  An efficient way to guess the library type of your RNA-Seq data.
  ☆30Updated 2 years ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆52Updated 2 months ago
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 4 months ago
• pachterlab / fastQpick
  ☆25Updated last month
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 2 months ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆56Updated 3 months ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated last week
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆58Updated this week
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• 123xiaochen / VCFshiny
  ☆29Updated 5 months ago
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆20Updated 7 years ago
• genepi / cloudgene3
  A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.
  ☆16Updated last month
• crazyhottommy / oneliner_100day_challenge
  Bioinformatics one-liner for 100 days
  ☆46Updated 11 months ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆26Updated this week
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆25Updated last week
• ivanek / Gviz
  This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.
  ☆79Updated 2 months ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆50Updated 5 months ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆32Updated 2 years ago
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆25Updated 2 years ago
• knausb / vcfR_documentation
  Documentation for vcfR
  ☆11Updated 2 years ago
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆56Updated last year
• NBISweden / workshop-epigenomics-RTDs
  workshop website on readthedocs
  ☆19Updated last month
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆38Updated last week
• Roleren / ORFik
  ☆33Updated last week
• hbctraining / Intro-to-variant-analysis
  ☆30Updated last month
• gexijin / shinygo
  ☆26Updated 3 weeks ago
• crazyhottommy / compbio_resources_chatomics
  ☆27Updated last year