sib-swiss / NGS-longreads-trainingLinks
☆12Updated 4 months ago
Alternatives and similar repositories for NGS-longreads-training
Users that are interested in NGS-longreads-training are comparing it to the libraries listed below
Sorting:
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆39Updated 2 weeks ago
- ☆21Updated 10 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated 2 weeks ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆54Updated 3 weeks ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- ☆31Updated last month
- An efficient way to guess the library type of your RNA-Seq data.☆31Updated 2 years ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 5 months ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated last year
- tools and notes for long reads analysis☆23Updated 2 months ago
- Bioinformatics one-liner for 100 days☆48Updated last year
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆56Updated 2 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆29Updated last week
- Documentation for vcfR☆11Updated last month
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 7 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- An R interface to the MEME Suite☆50Updated 2 weeks ago
- BigWig and BAM utilities☆96Updated last year
- Workflow management with Nextflow and nf-core☆25Updated 5 months ago
- visual analysis of your VCF files☆34Updated 2 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- ☆33Updated last week
- A catalogue of available long read sequencing data analysis tools☆77Updated 3 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆79Updated this week
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 2 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 weeks ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆27Updated 4 months ago
- A Python library to visualize and analyze long-read transcriptomes☆62Updated last month
- Merge fastq files split over lanes☆20Updated 7 years ago