sib-swiss / first-steps-with-R-training
repository of the 2-day course "First steps with R in Life Sciences" from SIB-training
☆42Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for first-steps-with-R-training
- Intro to Shell for Bioinformatics - with STG examples☆28Updated 8 years ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆37Updated 4 years ago
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo…☆33Updated 3 years ago
- Workshop • Intro to Bioinformatics using NGS data • 5 days☆13Updated last week
- website for the rnaseq course☆93Updated this week
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆109Updated 6 months ago
- RNA-seq workflow: exploratory analysis and differential expression☆71Updated last year
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆52Updated 2 months ago
- This RNAseq data analysis tutorial is created for educational purpose☆30Updated last month
- ☆44Updated 4 years ago
- ☆54Updated 8 months ago
- ☆47Updated 3 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆26Updated last year
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 5 years ago
- This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.☆46Updated last month
- Tutorials on accessing public reference and genomic data☆29Updated 2 years ago
- My youtube programming scripts☆38Updated last month
- Make Picrust2 Output Analysis and Visualization Easier☆109Updated last week
- Scripts for stat and plot figures in rice microbiome paper☆30Updated last month
- Analysis of (gut) microbiome in Qiime2 and R.☆16Updated 2 months ago
- Analysis framework for integrating gut microbiome and host gene expression data☆31Updated 2 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆123Updated last week
- ☆68Updated 2 years ago
- Bioconductor teaching and education committee☆41Updated last week
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆30Updated 6 months ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆99Updated 10 months ago
- R implementation of the LEfSe method☆44Updated 2 weeks ago
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆117Updated 4 years ago
- 𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of …☆60Updated last year