sib-swiss / first-steps-with-R-training
repository of the 2-day course "First steps with R in Life Sciences" from SIB-training
☆41Updated 7 months ago
Related projects: ⓘ
- Intro to Shell for Bioinformatics - with STG examples☆28Updated 8 years ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆50Updated 3 months ago
- Tutorials on accessing public reference and genomic data☆29Updated 2 years ago
- Make Picrust2 Output Analysis and Visualization Easier☆101Updated 5 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆107Updated 4 months ago
- ☆53Updated 6 months ago
- An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…☆10Updated 3 years ago
- RNA-seq workflow: exploratory analysis and differential expression☆69Updated 10 months ago
- ☆47Updated 3 years ago
- Workshop • Intro to Bioinformatics using NGS data • 5 days☆13Updated 3 weeks ago
- ☆70Updated 2 years ago
- This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.☆46Updated last month
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 5 years ago
- 𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of …☆60Updated 11 months ago
- This tutorial is created for educational purpose☆28Updated last month
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆26Updated last year
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆109Updated last year
- ☆67Updated 2 years ago
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo…☆33Updated 3 years ago
- R implementation of the LEfSe method☆43Updated this week
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆36Updated 4 years ago
- website for the rnaseq course☆91Updated 3 weeks ago
- My youtube programming scripts☆33Updated last week
- Scripts and data for Plotting in R for Biologists, a video course on YouTube☆55Updated 4 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- ☆43Updated 4 years ago
- Repository of common bioinformatics scripts☆38Updated 2 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆100Updated this week
- Scripts for stat and plot figures in rice microbiome paper☆29Updated 2 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆96Updated 8 months ago