10x Genomics analysis guides files
☆48Oct 6, 2026Updated 3 weeks ago
Alternatives and similar repositories for analysis_guides
Users that are interested in analysis_guides are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆122Jun 9, 2025Updated last year
- ShinyCell2 is a lightweight R package for building interactive, shareable apps to explore single-cell multi-omics, scATAC-seq and spatial…☆74Jun 1, 2025Updated last year
- ☆24Jan 10, 2025Updated last year
- Module 4 for HKU Single-cell Workshop☆12Jul 6, 2021Updated 5 years ago
- Example code for calling Panther API services☆13Dec 12, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code for the TAURUS study☆13Oct 24, 2024Updated 2 years ago
- An R package for performing cell typing in SMI and other single cell data☆56May 1, 2026Updated 6 months ago
- ☆31Apr 5, 2025Updated last year
- Scripts and notebooks for Qin & Cardoso Rodriguez et al☆11Dec 7, 2023Updated 2 years ago
- UHCA☆11Jan 23, 2025Updated last year
- Single cell manifold generator (SCMG)☆15Oct 22, 2026Updated last week
- datasets and other files for the intro_to_programming class. ut-austin☆19Oct 22, 2026Updated last week
- Using TCR and expression for sequence embedding☆64Jan 6, 2026Updated 9 months ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆33Sep 30, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Code used for mouse single cell RNAseq testis atlas☆12Nov 28, 2020Updated 5 years ago
- Cluster Identity Predictor (R package implementation)☆22Aug 13, 2026Updated 2 months ago
- List of Spatial Transcriptomics related Tools organized per category☆212Sep 9, 2026Updated last month
- Spatial neighbour-aware transcript cleanup for imaging-based spatial transcriptomics data (Xenium, MERSCOPE, CosMx). XeniumClean removes…☆21Jul 19, 2026Updated 3 months ago
- Title-screened computational biology, bioinformatics, biostatistics and biotech data science leads for early-career searches. Dated emplo…☆51Updated this week
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 7 years ago
- Single-cell differential expression☆22Oct 18, 2026Updated 2 weeks ago
- ☆11Oct 4, 2023Updated 3 years ago
- ☆38Jul 26, 2016Updated 10 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Visium HD segmented cell-level workflow demonstration☆10Jan 22, 2026Updated 9 months ago
- Shell wrappers for bulk and 10X single cell NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, GWAS, etc.☆17Oct 12, 2026Updated 3 weeks ago
- R package to process BUS files☆11Mar 18, 2026Updated 7 months ago
- ☆19Mar 5, 2026Updated 7 months ago
- Robust and scalable single-cell signature scoring☆29Updated this week
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆38Apr 30, 2025Updated last year
- Convert Seurat objects to 10x Genomics Loupe files.☆165Updated this week
- ☆19Aug 25, 2026Updated 2 months ago
- ☆10Sep 27, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Dec 10, 2021Updated 4 years ago
- Methods to discover gene programs on single-cell data☆213Oct 12, 2026Updated 3 weeks ago
- ☆12Apr 26, 2020Updated 6 years ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆34Jul 24, 2025Updated last year
- stFormer generates contextual gene representations within single cell and spatial niche.☆11Oct 1, 2026Updated last month
- The codes and files for the study of subsolid nodules (SSN).☆15Oct 13, 2020Updated 6 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆110Apr 16, 2026Updated 6 months ago