10x Genomics analysis guides files
☆43Aug 7, 2026Updated this week
Alternatives and similar repositories for analysis_guides
Users that are interested in analysis_guides are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆118Jun 9, 2025Updated last year
- ☆24Jan 10, 2025Updated last year
- Module 4 for HKU Single-cell Workshop☆12Jul 6, 2021Updated 5 years ago
- ☆30Apr 5, 2025Updated last year
- datasets and other files for the intro_to_programming class. ut-austin☆17Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- UHCA☆11Jan 23, 2025Updated last year
- List of Spatial Transcriptomics related Tools organized per category☆198Jul 16, 2026Updated 3 weeks ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆32Sep 30, 2025Updated 10 months ago
- Single-cell differential expression☆19Apr 23, 2026Updated 3 months ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- Example code for calling Panther API services☆13Dec 12, 2023Updated 2 years ago
- ☆17Mar 5, 2026Updated 5 months ago
- Robust and scalable single-cell signature scoring☆28Jul 28, 2026Updated 2 weeks ago
- ☆38Jul 26, 2016Updated 10 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆38Apr 30, 2025Updated last year
- An R package for performing cell typing in SMI and other single cell data☆53May 1, 2026Updated 3 months ago
- ☆12Apr 26, 2020Updated 6 years ago
- bioinformatics R test code☆14May 29, 2026Updated 2 months ago
- The codes and files for the study of subsolid nodules (SSN).☆15Oct 13, 2020Updated 5 years ago
- ☆35May 31, 2026Updated 2 months ago
- Shell wrappers for bulk and 10X single cell NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, GWAS, etc.☆17Aug 4, 2026Updated last week
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆35Jul 24, 2025Updated last year
- Using TCR and expression for sequence embedding☆63Jan 6, 2026Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆20Jun 26, 2025Updated last year
- This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…☆12Feb 7, 2023Updated 3 years ago
- Codes used in pan-T cell analysis☆68Mar 13, 2023Updated 3 years ago
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆12Mar 3, 2017Updated 9 years ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆62May 30, 2024Updated 2 years ago
- ☆14Feb 21, 2023Updated 3 years ago
- ☆37Oct 22, 2025Updated 9 months ago
- ☆36Jan 3, 2025Updated last year
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆82Feb 10, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆32Oct 6, 2025Updated 10 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆50Aug 18, 2025Updated 11 months ago
- Methods to discover gene programs on single-cell data☆206Jul 21, 2026Updated 3 weeks ago
- ☆15Updated this week
- Training material for intermediate R / Bioconductor courses☆17Mar 15, 2023Updated 3 years ago
- GPU-accelerated RCTD for spatial transcriptomics☆47Jul 30, 2026Updated 2 weeks ago
- single RNA-seq analysis of human keloid samples☆14May 25, 2021Updated 5 years ago