Alternatives and similar repositories for analysis_guides

Users that are interested in analysis_guides are comparing it to the libraries listed below

• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆75Updated 3 months ago
• YosefLab / popV
  ☆78Updated this week
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆102Updated 9 months ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆82Updated 2 months ago
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆40Updated 3 years ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆88Updated 11 months ago
• data2intelligence / CytoSig
  ☆52Updated 9 months ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆110Updated last month
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆106Updated 2 years ago
• ggjlab / HCL
  Tools used in Human Cell Landscape(HCL)
  ☆54Updated 4 years ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆62Updated last year
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆112Updated 2 months ago
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆88Updated 4 months ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆68Updated this week
• wagnerlab-berkeley / Compass
  ☆23Updated 3 months ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆107Updated 3 months ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆60Updated last year
• Coolgenome / iTALK
  ☆62Updated 5 years ago
• AllonKleinLab / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆38Updated 5 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆105Updated 2 months ago
• KChen-lab / METAFlux
  ☆66Updated 11 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆49Updated last year
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆73Updated 10 months ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆59Updated last year
• cellgeni / batchbench
  ☆46Updated 3 years ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆74Updated 2 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆63Updated last year
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆45Updated 11 months ago