Alternatives and similar repositories for sequencing-data-analysis-training

Users that are interested in sequencing-data-analysis-training are comparing it to the libraries listed below

• nextflow-io / training
  Nextflow training material
  ☆183Updated this week
• evanpeikon / co_expression_network
  A DIY guide to gene co-expression network analysis
  ☆12Updated 3 months ago
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆338Updated 3 weeks ago
• SvetlanaUP / A-microbiologist-wants-to-compute
  This repo collects the list of learning online resources related to microbiome computational science and tools.
  ☆92Updated 8 months ago
• CompEpigen / figeno
  Tool for plotting sequencing data along genomic coordinates.
  ☆296Updated 2 weeks ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆235Updated 4 years ago
• usadellab / Trimmomatic
  ☆256Updated last year
• digo4 / Clinical-Genomics
  Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
  ☆41Updated last year
• GoekeLab / awesome-nanopore
  A curated list of awesome nanopore analysis tools.
  ☆282Updated 2 weeks ago
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆203Updated last week
• boulderrinnlab / MASTER_CLASS
  ☆10Updated last month
• evanpeikon / bash_fundamentals
  Introduction to Bash for bioinformatics
  ☆46Updated 11 months ago
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆177Updated last week
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆141Updated 3 years ago
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆139Updated 10 years ago
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆206Updated 11 months ago
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆187Updated 2 months ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆130Updated last year
• rnnh / bioinfo-notebook
  🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
  ☆181Updated 4 years ago
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆213Updated last year
• kcleal / gw
  Genome browser and variant annotation
  ☆362Updated 2 weeks ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆294Updated 9 months ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆335Updated 3 weeks ago
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆254Updated 2 years ago
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆232Updated this week
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆212Updated 2 weeks ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆215Updated last week
• nf-core / ampliseq
  Amplicon sequencing analysis workflow using DADA2 and QIIME2
  ☆210Updated this week
• BrooksLabUCSC / flair
  Full-Length Alternative Isoform analysis of RNA
  ☆230Updated this week
• biobakery / MetaPhlAn
  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
  ☆353Updated 3 weeks ago