Alternatives and similar repositories for sequencing-data-analysis-training

Users that are interested in sequencing-data-analysis-training are comparing it to the libraries listed below

• evanpeikon / co_expression_network
  A DIY guide to gene co-expression network analysis
  ☆12Updated 7 months ago
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆350Updated 5 months ago
• SvetlanaUP / A-microbiologist-wants-to-compute
  This repo collects the list of learning online resources related to microbiome computational science and tools.
  ☆100Updated last year
• CompEpigen / figeno
  Tool for plotting sequencing data along genomic coordinates.
  ☆321Updated 4 months ago
• nextflow-io / training
  Nextflow training material
  ☆195Updated this week
• rnnh / bioinfo-notebook
  🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
  ☆196Updated 5 years ago
• usadellab / Trimmomatic
  ☆274Updated last month
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆214Updated last month
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆148Updated 2 years ago
• digo4 / Clinical-Genomics
  Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
  ☆43Updated last year
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆195Updated 2 months ago
• sarahtolba / RNA-Seq-Analysis-toturials
  This repo is designed as a step-by-step tutorial to teach RNA-seq analysis
  ☆15Updated 5 months ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆298Updated last month
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆243Updated 4 years ago
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆223Updated last month
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆299Updated 2 years ago
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆216Updated last year
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆244Updated this week
• evanpeikon / bash_fundamentals
  Introduction to Bash for bioinformatics
  ☆49Updated last year
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆226Updated 4 months ago
• Magdoll / cDNA_Cupcake
  Miscellaneous collection of Python and R scripts for processing Iso-Seq data
  ☆274Updated 2 years ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆142Updated 3 months ago
• wwood / kingfisher-download
  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
  ☆280Updated 3 months ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆443Updated 10 months ago
• BrooksLabUCSC / flair
  Full-Length Alternative Isoform analysis of RNA
  ☆240Updated this week
• Mehdi-Kn / RNAseq-Pipeline
  This repository offers a streamlined RNA-Seq analysis workflow implemented in R, designed to transform raw sequencing data into meaningfu…
  ☆29Updated 11 months ago
• GoekeLab / awesome-nanopore
  A curated list of awesome nanopore analysis tools.
  ☆300Updated 4 months ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆366Updated 4 months ago
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆182Updated 2 weeks ago
• sib-swiss / first-steps-with-python-training
  repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training
  ☆65Updated last week