sib-swiss / sequencing-data-analysis-trainingLinks
SIB course that introduces analysis of NGS data
☆16Updated last month
Alternatives and similar repositories for sequencing-data-analysis-training
Users that are interested in sequencing-data-analysis-training are comparing it to the libraries listed below
Sorting:
- Nextflow training material☆207Updated this week
- This repo collects the list of learning online resources related to microbiome computational science and tools.☆103Updated last year
- A DIY guide to gene co-expression network analysis☆13Updated 8 months ago
- Download FASTQ files from SRA or ENA repositories.☆359Updated 3 weeks ago
- 🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.☆200Updated 5 years ago
- This repo is designed as a step-by-step tutorial to teach RNA-seq analysis☆15Updated last week
- Tool for plotting sequencing data along genomic coordinates.☆335Updated 2 weeks ago
- ☆282Updated 2 months ago
- Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline☆43Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- A curated list of awesome nanopore analysis tools.☆302Updated 5 months ago
- Step-by-step analysis pipeline for RNA-seq data☆160Updated 2 years ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆286Updated 4 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆251Updated 3 weeks ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆348Updated 3 weeks ago
- Nanopore demultiplexing, QC and alignment pipeline☆218Updated last month
- Bioinformatics Workbook repository☆199Updated last week
- ☆13Updated 6 months ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆184Updated last week
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆223Updated this week
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆447Updated last year
- Genome Assembly and Annotation Service code☆217Updated 2 years ago
- TransDecoder source☆301Updated 3 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆230Updated last week
- Pipeline to fetch metadata and raw FastQ files from public databases☆184Updated last month
- Robs manual for the computational genomics and bioinformatics class.☆265Updated last year
- RNA-seq workflow using STAR and DESeq2☆351Updated last week
- This repository offers a streamlined RNA-Seq analysis workflow implemented in R, designed to transform raw sequencing data into meaningfu…☆29Updated last year
- Introduction to Bash for bioinformatics☆50Updated last year