sib-swiss / sequencing-data-analysis-trainingLinks
SIB course that introduces analysis of NGS data
☆16Updated 3 months ago
Alternatives and similar repositories for sequencing-data-analysis-training
Users that are interested in sequencing-data-analysis-training are comparing it to the libraries listed below
Sorting:
- Nextflow training material☆193Updated last week
- This repo collects the list of learning online resources related to microbiome computational science and tools.☆97Updated 10 months ago
- ☆266Updated 3 weeks ago
- A DIY guide to gene co-expression network analysis☆12Updated 5 months ago
- Download FASTQ files from SRA or ENA repositories.☆343Updated 3 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- Tool for plotting sequencing data along genomic coordinates.☆309Updated 2 months ago
- Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline☆43Updated last year
- 🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.☆188Updated 4 years ago
- bioBakery tools for meta'omic profiling☆284Updated 3 months ago
- Bioinformatics Workbook repository☆192Updated 2 weeks ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆217Updated 3 weeks ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆364Updated last week
- TransDecoder source☆297Updated 3 weeks ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆211Updated last week
- Nanopore demultiplexing, QC and alignment pipeline☆211Updated 2 months ago
- Step-by-step analysis pipeline for RNA-seq data☆140Updated 2 years ago
- Genome Assembly and Annotation Service code☆214Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆350Updated last month
- A curated list of awesome nanopore analysis tools.☆292Updated 2 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆434Updated 8 months ago
- Tool to plot synteny and structural rearrangements between genomes☆320Updated 5 months ago
- RNA-seq workflow using STAR and DESeq2☆344Updated last week
- NCBI Prokaryotic Genome Annotation Pipeline☆354Updated 2 weeks ago
- parallel fastq-dump wrapper☆298Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆237Updated last week
- Introduction to Bash for bioinformatics☆48Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆275Updated last year
- SortMeRNA: next-generation sequence filtering and alignment tool☆276Updated last month
- ☆10Updated 3 months ago