Alternatives and similar repositories for sequencing-data-analysis-training

Users that are interested in sequencing-data-analysis-training are comparing it to the libraries listed below

• nextflow-io / training
  Nextflow training material
  ☆164Updated this week
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆78Updated this week
• digo4 / Clinical-Genomics
  Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
  ☆39Updated last year
• SvetlanaUP / A-microbiologist-wants-to-compute
  This repo collects the list of learning online resources related to microbiome computational science and tools.
  ☆92Updated 6 months ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆138Updated 3 years ago
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆110Updated last year
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆208Updated this week
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆324Updated last month
• sib-swiss / first-steps-with-python-training
  repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training
  ☆59Updated last month
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆223Updated this week
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆147Updated 8 months ago
• epi2me-labs / wf-human-variation
  ☆124Updated this week
• vappiah / bacterial-genomics-tutorial
  ☆49Updated last year
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆175Updated this week
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆201Updated 2 weeks ago
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆146Updated this week
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆131Updated 3 weeks ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆84Updated last week
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆104Updated 3 years ago
• epi2me-labs / wf-transcriptomes
  ☆91Updated this week
• HadrienG / tutorials
  Various bioinformatics tutorials
  ☆60Updated last year
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆212Updated last month
• evanpeikon / bash_fundamentals
  Introduction to Bash for bioinformatics
  ☆45Updated 9 months ago
• sib-swiss / first-steps-with-R-training
  repository of the 2-day course "First steps with R in Life Sciences" from SIB-training
  ☆46Updated 3 months ago
• jtlovell / GENESPACE
  ☆207Updated 3 months ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆123Updated 2 years ago
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆217Updated this week
• ncbi / egapx
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆133Updated last month
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆303Updated last month
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆128Updated 4 months ago