Alternatives and similar repositories for sequencing-data-analysis-training

Users that are interested in sequencing-data-analysis-training are comparing it to the libraries listed below

• nextflow-io / training
  Nextflow training material
  ☆209Updated this week
• usadellab / Trimmomatic
  ☆284Updated 3 months ago
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆363Updated last week
• SvetlanaUP / A-microbiologist-wants-to-compute
  This repo collects the list of learning online resources related to microbiome computational science and tools.
  ☆103Updated last year
• evanpeikon / co_expression_network
  A DIY guide to gene co-expression network analysis
  ☆13Updated 9 months ago
• CompEpigen / figeno
  Tool for plotting sequencing data along genomic coordinates.
  ☆335Updated last month
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆244Updated 4 years ago
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆218Updated last month
• TransDecoder / TransDecoder
  TransDecoder source
  ☆301Updated 3 months ago
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆217Updated 2 years ago
• GoekeLab / awesome-nanopore
  A curated list of awesome nanopore analysis tools.
  ☆305Updated 6 months ago
• rnnh / bioinfo-notebook
  🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
  ☆201Updated 5 years ago
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆201Updated last month
• digo4 / Clinical-Genomics
  Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
  ☆43Updated 2 years ago
• nf-core / mag
  Assembly and binning of metagenomes
  ☆266Updated this week
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆186Updated this week
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆375Updated last week
• nf-core / methylseq
  Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair
  ☆185Updated last week
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆223Updated this week
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆337Updated 9 months ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆229Updated 6 months ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆285Updated 11 months ago
• biobakery / MetaPhlAn
  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
  ☆391Updated last month
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆143Updated 5 months ago
• BrooksLabUCSC / flair
  Full-Length Alternative Isoform analysis of RNA
  ☆245Updated last week
• kcleal / gw
  Genome browser and variant annotation
  ☆387Updated 2 months ago
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆363Updated 2 months ago
• biobakery / biobakery
  bioBakery tools for meta'omic profiling
  ☆302Updated 7 months ago
• sarahtolba / -Bulk-RNA-seq-Analysis-Tutorial-Mus-musculus-
  This repo is designed as a step-by-step tutorial to teach RNA-seq analysis
  ☆15Updated 3 weeks ago
• nf-core / ampliseq
  Amplicon sequencing analysis workflow using DADA2 and QIIME2
  ☆231Updated this week