Variational Inference of Polygenic Risk Scores
☆30Apr 22, 2025Updated last year
Alternatives and similar repositories for viprs
Users that are interested in viprs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 20…☆15Sep 5, 2019Updated 6 years ago
- DENTIST (Detecting Errors iN analyses of summary staTISTics) is a QC tool for summary-data-based analyses.☆29Oct 5, 2023Updated 2 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Sep 17, 2020Updated 5 years ago
- R package for two-sample Mendelian randomization using the robust adjusted profile score☆42Oct 31, 2025Updated 6 months ago
- Documentation on new GWAS Summary Statistics Standard☆24Nov 19, 2025Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆11Apr 5, 2024Updated 2 years ago
- A fine-mapping method integrating GWAS summary statistics and functional annotation data☆11Dec 28, 2023Updated 2 years ago
- Miscellaneous genomics tools and data structures☆15Jul 26, 2024Updated last year
- GWAS genetics Fine-mapping method☆17May 17, 2024Updated last year
- Applying polygenic scores (PGS) on imputed genotypes☆35Oct 28, 2025Updated 6 months ago
- GridLMM package☆39Oct 16, 2025Updated 6 months ago
- Simulate GWAS data from an arbitrary DAG☆11Oct 29, 2025Updated 6 months ago
- Modeling and Analysis of (Statistical) Genetics data in python☆18Jun 12, 2025Updated 10 months ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆54Oct 19, 2025Updated 6 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆20Nov 26, 2023Updated 2 years ago
- RSparsePro for robust fine-mapping in the presence of LD mismatch☆15Nov 4, 2024Updated last year
- Python module to read binary Plink files.☆17Mar 25, 2026Updated last month
- An R package for performing MultiSTAAR procedure in whole-genome sequencing studies☆12Nov 14, 2024Updated last year
- A list of awesome tools for complex trait genetics.☆86Jan 28, 2025Updated last year
- ☆24Jun 30, 2023Updated 2 years ago
- causal TWAS (cTWAS)☆50Mar 18, 2026Updated last month
- Fast and scalable variant annotation tool☆30May 1, 2022Updated 4 years ago
- The ultimate search extension for R☆16Sep 27, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- bumphunter☆18Mar 19, 2024Updated 2 years ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Mar 31, 2021Updated 5 years ago
- SMTpred is a program which combines SNP effects or individual scores from multiple traits according to their sample size, SNP-heritabilit…☆15May 25, 2017Updated 8 years ago
- A multi-ancestry polygenic risk score approach☆20Jul 20, 2024Updated last year
- Zotero integration for Obsidian in Neovim☆18Aug 21, 2025Updated 8 months ago
- Data and code for the Effector index☆14Oct 13, 2020Updated 5 years ago
- R package to perform two-sample Mendelian Randomisation (MR) analyses using (potentially) overlapping samples☆67Jan 9, 2025Updated last year
- R package to estimate kinship and FST from SNP data☆21Jan 27, 2026Updated 3 months ago
- user-friendly pipeline for GWAS fine-mapping☆14Mar 9, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PaNeV: an R package for a pathway-based network visualization☆10Aug 25, 2025Updated 8 months ago
- Partitioning algorithm developed for LAVA☆17May 17, 2024Updated last year
- RSS: Regression with Summary Statistics☆51Sep 16, 2024Updated last year
- Search public databases for given genotypic information☆12Mar 21, 2018Updated 8 years ago
- PRS pipeline using PRS_CS☆15Oct 21, 2025Updated 6 months ago
- Analysis package for processing counts from genome-wide CRISPR/Cas9 screens☆16Feb 19, 2021Updated 5 years ago
- QTL Discovery using Annotations☆29Dec 12, 2022Updated 3 years ago