Alternatives and similar repositories for viprs:

Users that are interested in viprs are comparing it to the libraries listed below

• weizhou0 / GATE
  ☆22Updated last year
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆49Updated last month
• astrazeneca-cgr-publications / PEACOK
  Phenome Exome Association and Correlation Of Key phenotypes
  ☆28Updated 3 years ago
• MRCIEU / gwas-vcf-specification
  Specification for the GWAS-VCF format (manuscript in preparation)
  ☆24Updated 3 years ago
• Nealelab / UKBB_ldsc_scripts
  Scripts used for generating Neale Lab UKB results
  ☆19Updated 2 years ago
• zhwm / RSparsePro_LD
  RSparsePro for robust fine-mapping in the presence of LD mismatch
  ☆12Updated 5 months ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• xqwen / torus
  QTL Discovery using Annotations
  ☆24Updated 2 years ago
• EBISPOT / gwas-summary-statistics-standard
  Documentation on new GWAS Summary Statistics Standard
  ☆19Updated 8 months ago
• Kyoko-wtnb / FUMA-webapp
  Source code of FUMA GWAS web application
  ☆57Updated last year
• xinhe-lab / ctwas
  package for the causal TWAS project
  ☆41Updated last month
• zhilizheng / SBayesRC
  ☆33Updated 7 months ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆46Updated 5 months ago
• FINNGEN / CS-PRS-pipeline
  PRS pipeline using PRS_CS
  ☆13Updated 2 months ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• yanglab-emory / TIGAR
  ☆21Updated 2 weeks ago
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆26Updated last year
• carlaml / LDpred-funct
  Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
  ☆17Updated 7 months ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 years ago
• MalteThodberg / awesome-multitrait-gwas
  List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
  ☆31Updated 5 months ago
• statgen / swiss
  Software to help identify overlap between association scan results and GWAS hit catalogs.
  ☆15Updated 2 years ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆48Updated 2 months ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 6 months ago
• omerwe / S-PCGC
  Heritability, genetic correlation and functional enrichment estimation for case-control studies
  ☆19Updated last year
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆33Updated last month
• AlexTISYoung / snipar
  Imputation of parental genotypes, inference of sibling IBD segments, family based GWAS, and polygenic score analyses.
  ☆31Updated this week
• xqwen / dap
  software package for integrative genetic association analysis
  ☆34Updated last year
• yuanzhongshang / PMR
  ☆23Updated 4 years ago
• wouterpeyrot / CCGWAS
  ☆19Updated 2 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago