carbocation / genomisc
Miscellaneous genomics tools and data structures
☆15Updated 6 months ago
Alternatives and similar repositories for genomisc:
Users that are interested in genomisc are comparing it to the libraries listed below
- A unified framework to estimate genetic effects on the variance of quantitative traits☆10Updated last year
- Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 20…☆14Updated 5 years ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆10Updated 5 years ago
- Data and code for the Effector index☆13Updated 4 years ago
- ☆24Updated 4 years ago
- Software implementing stratified LD fourth moments regression.☆10Updated 5 years ago
- ☆15Updated 6 months ago
- ☆11Updated 2 years ago
- snpnet - Efficient Lasso Solver for Large-scale genetic variant data☆18Updated 11 months ago
- ☆12Updated 5 months ago
- PRS pipeline using PRS_CS☆12Updated last week
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- Framework for efficient high-dimensional association analyses.☆17Updated 3 years ago
- ☆26Updated last year
- ☆13Updated last year
- A rapido and lightweight method for PGS computation☆13Updated 4 months ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆17Updated 3 months ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Updated 2 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 5 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome☆11Updated 4 years ago
- LEMMA (Linear Environment Mixed Model Analysis) aims to uncover GxE interactions between SNPs and a linear combination of multiple enviro…☆12Updated last year
- Scripts used for generating Neale Lab UKB results☆19Updated 2 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- Variational Inference of Polygenic Risk Scores☆23Updated this week
- A CNN - based pipeline for calling somatic SNP and INDEL variants without a matched normal☆11Updated 2 years ago
- Converting UK Biobank genome-wide genotyping data from one reference build to another☆14Updated 8 months ago
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated 2 years ago
- Analaysis for the batch correction paper☆9Updated last month
- Fine-mapping pipeline for Open Targets Genetics☆25Updated 2 years ago