carbocation / genomisc
Miscellaneous genomics tools and data structures
☆15Updated 5 months ago
Alternatives and similar repositories for genomisc:
Users that are interested in genomisc are comparing it to the libraries listed below
- snpnet - Efficient Lasso Solver for Large-scale genetic variant data☆18Updated 10 months ago
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated last year
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆13Updated last week
- Exercises for training scientists to perform some RNA-seq analyses.☆11Updated 5 years ago
- CWL (and input file) parser for Golang, used by github.com/otiai10/yacle☆22Updated 5 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated 2 years ago
- Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 20…☆14Updated 5 years ago
- Data and code for the Effector index☆13Updated 4 years ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆26Updated this week
- ☆24Updated 4 years ago
- ☆26Updated last year
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 4 years ago
- Software for exploration of gene expression data from single-cell RNA sequencing.☆28Updated 5 years ago
- Statistical Inference for Unsupervised Learning☆17Updated last month
- Build contrasts for models defined with formulaic☆10Updated this week
- A Python package for jointly analyzing multimodal single-cell sequencing data☆20Updated this week
- Contrastive Poisson latent variable models (CPLVMs)☆11Updated 2 years ago
- ☆12Updated 4 months ago
- In-house computational biology workflows at Columbia Neurology☆33Updated 9 months ago
- ☆10Updated 3 years ago
- Scripts used for generating Neale Lab UKB results☆19Updated 2 years ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- A unified framework to estimate genetic effects on the variance of quantitative traits☆10Updated last year
- Software implementing stratified LD fourth moments regression.☆10Updated 5 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- Clinical oncology tumor board decision support system made by the Decider project.☆13Updated last month
- A Julia package for extracting mutation signatures using topic models☆18Updated 2 years ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆10Updated 5 years ago
- PRS pipeline using PRS_CS☆12Updated last month
- Comparison of single cell normalization strategies☆10Updated 3 years ago