Alternatives and similar repositories for RSparsePro_LD

Users that are interested in RSparsePro_LD are comparing it to the libraries listed below

• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆48Updated 2 years ago
• weizhou0 / GATE
  ☆23Updated 2 years ago
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆47Updated last week
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆27Updated 2 months ago
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆29Updated 2 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆35Updated 5 years ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆52Updated 10 months ago
• joepickrell / fgwas
  Functional genomics and genome-wide association studies
  ☆69Updated 7 years ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆28Updated 3 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 7 months ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆71Updated last month
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆29Updated last month
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆20Updated 10 years ago
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆53Updated 7 years ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆31Updated last year
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 3 years ago
• xihaoli / STAAR
  An R package for performing STAAR procedure in whole-genome sequencing studies
  ☆97Updated 11 months ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆35Updated 7 months ago
• fauman / EGEA
  Every Gene Ever Annotated in published GWAS
  ☆50Updated 3 years ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆61Updated 6 years ago
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆54Updated 3 months ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆62Updated 3 months ago
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆76Updated last month
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆54Updated 5 months ago
• karltayeb / cafeh
  ☆13Updated 2 years ago
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆26Updated last year
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆35Updated last month
• FINNGEN / CS-PRS-pipeline
  PRS pipeline using PRS_CS
  ☆14Updated 3 months ago
• richardslab / Ei
  Data and code for the Effector index
  ☆14Updated 5 years ago