Alternatives and similar repositories for RSparsePro_LD

Users that are interested in RSparsePro_LD are comparing it to the libraries listed below

• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆45Updated 2 weeks ago
• joepickrell / fgwas
  Functional genomics and genome-wide association studies
  ☆67Updated 7 years ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 3 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆46Updated 2 years ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆47Updated 3 months ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆60Updated 6 years ago
• weizhou0 / GATE
  ☆22Updated 2 years ago
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆24Updated 2 years ago
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆26Updated 3 weeks ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆52Updated 2 months ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆33Updated 5 years ago
• karltayeb / cafeh
  ☆13Updated 2 years ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆25Updated 10 months ago
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆27Updated 2 years ago
• andreyshabalin / MatrixEQTL
  Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
  ☆84Updated last year
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆47Updated this week
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆46Updated 5 months ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆38Updated 8 months ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆33Updated 2 months ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆68Updated 2 years ago
• fauman / EGEA
  Every Gene Ever Annotated in published GWAS
  ☆48Updated 2 years ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆25Updated 2 years ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆35Updated 2 years ago
• clagiamba / moloc
  ☆36Updated 4 years ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• LaurenceHowe / SiblingGWAS
  Scripts for running a sibling GWAS
  ☆15Updated 3 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆68Updated 10 months ago
• richardslab / Ei
  Data and code for the Effector index
  ☆13Updated 4 years ago
• zhouhufeng / FAVORannotator
  ☆20Updated 2 years ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago