Alternatives and similar repositories for SPACox

Users that are interested in SPACox are comparing it to the libraries listed below

• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆27Updated last week
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 3 years ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆32Updated last year
• globalbiobankmeta / multi-ancestry-pwmr
  Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper
  ☆18Updated last year
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆24Updated 3 years ago
• clagiamba / moloc
  ☆35Updated 4 years ago
• JonSulc / PolyMR
  Polynomial Mendelian randomization for the inference of non-linear causal effects
  ☆13Updated 2 years ago
• dongjunchung / GPA
  GPA: Genetic analysis incorporating Pleiotropy and Annotation
  ☆15Updated 5 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• marcoralab / MRcovid
  ☆11Updated 3 years ago
• jean997 / cause
  R package for CAUSE
  ☆56Updated last year
• tobyjohnson / gtx
  Genetics ToolboX R package
  ☆32Updated 5 years ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆54Updated 4 years ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆29Updated 9 months ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆54Updated last year
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆30Updated last year
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆18Updated 9 years ago
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆36Updated 5 months ago
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆34Updated 3 weeks ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆52Updated last month
• jwr-git / pwcoco
  Pair-wise conditional analysis and colocalisation
  ☆40Updated last year
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated last year
• joepickrell / gwas-pw
  Pariwise analysis of GWAS
  ☆43Updated 6 years ago
• borangao / MESuSiE
  ☆17Updated 7 months ago
• gamazonlab / MR-JTI
  ☆57Updated 6 months ago
• MRCIEU / gwasglue2
  Connecting GWAS summary data to analytical tools
  ☆21Updated last year
• thewonlab / H-MAGMA
  ☆33Updated 2 years ago
• yanglab-emory / TIGAR
  ☆21Updated 3 months ago
• opain / TWAS-GSEA
  R script that performs gene-set or gene property analysis using TWAS results.
  ☆32Updated 10 months ago