DeepGraphLearning / GearBind
Pretrainable geometric graph neural network for antibody affinity maturation
☆45Updated 6 months ago
Alternatives and similar repositories for GearBind:
Users that are interested in GearBind are comparing it to the libraries listed below
- ☆35Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆27Updated 2 months ago
- Fitness landscapes for antibodies☆60Updated last month
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆56Updated last year
- ☆31Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆27Updated last month
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆74Updated 7 months ago
- Code for humanization of antibody and nanobody☆35Updated 2 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆47Updated last month
- ☆46Updated 8 months ago
- Antibody-Antigen Docking and Affinity Benchmark☆69Updated 4 years ago
- Reaction-Conditioned Virtual Screening of Enzymes☆26Updated 2 months ago
- ☆30Updated 4 months ago
- Antibody-specific masked language model☆47Updated last year
- ☆81Updated 4 months ago
- ☆67Updated last year
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆86Updated last year
- ☆68Updated 4 years ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆34Updated last year
- Official repository of GENzyme☆41Updated 2 months ago
- Learning Structure-based Pocket Representations for Protein-Ligand Interaction Prediction☆30Updated last year
- BioLiP2 database curation and web interface☆23Updated last month
- Kinase–drug binding prediction with calibrated uncertainty quantification☆24Updated last year
- Evaluating Protein Binding Interfaces with Transformer Networks☆41Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆31Updated 3 months ago
- ☆21Updated 3 weeks ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆53Updated last month
- ☆52Updated 10 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆37Updated 8 months ago
- Pro-FSFP: Few-Shot Protein Fitness Prediction☆73Updated last month