duolinwang / S-PLM
S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
☆56Updated last month
Alternatives and similar repositories for S-PLM:
Users that are interested in S-PLM are comparing it to the libraries listed below
- Pretrainable geometric graph neural network for antibody affinity maturation☆48Updated 6 months ago
- open source code for Tencent tFold☆90Updated this week
- ☆98Updated 8 months ago
- Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.☆30Updated 2 months ago
- ☆68Updated 4 years ago
- Fitness landscapes for antibodies☆62Updated last month
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆27Updated 2 months ago
- Efficient implementatin of ESM family.☆53Updated last month
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆53Updated 9 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆102Updated 2 weeks ago
- Code for humanization of antibody and nanobody☆36Updated 3 months ago
- ☆81Updated 2 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 7 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆56Updated last year
- ☆48Updated last year
- Protein language model trained on coding DNA☆46Updated 4 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆105Updated 2 months ago
- Public repository describing training and testing of AntiBERTa.☆58Updated last year
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆39Updated 3 months ago
- ☆110Updated 4 months ago
- ☆31Updated last year
- ☆54Updated 11 months ago
- ☆41Updated 8 months ago
- TEIM: TCR-Epitope Interaction Modeling☆46Updated last year
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆52Updated last month
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆86Updated last year
- Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"☆36Updated 6 months ago
- ☆37Updated 5 months ago
- ☆39Updated 11 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆66Updated 4 months ago