Alternatives and similar repositories for S-PLM

Users that are interested in S-PLM are comparing it to the libraries listed below

• programmablebio / ptm-mamba
  ☆79Updated 3 months ago
• ai4protein / ProSST
  🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)
  ☆136Updated 3 months ago
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆109Updated last year
• DeepGraphLearning / GearBind
  Pretrainable geometric graph neural network for antibody affinity maturation
  ☆62Updated 6 months ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆66Updated last month
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆82Updated 3 weeks ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆112Updated 6 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆118Updated 6 months ago
• samsledje / ConPLex_dev
  ☆52Updated last year
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆84Updated 2 weeks ago
• varun-shanker / structural-evolution
  ☆113Updated last year
• zhengkangjie / ESM-AA
  ☆76Updated 7 months ago
• zhanghaicang / carbonmatrix_public
  ☆116Updated 3 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆43Updated 9 months ago
• dahjan / DMS_opt
  ☆72Updated 5 years ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆118Updated 6 months ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆158Updated 2 years ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆105Updated last month
• westlake-repl / SaprotHub
  Making Protein Modeling Accessible to All Biologists
  ☆118Updated 2 weeks ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆75Updated 7 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆91Updated this week
• ai4protein / ProtSSN
  🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…
  ☆73Updated 4 months ago
• ai4protein / VenusFSFP
  VenusFSFP: Few-Shot Protein Fitness Prediction
  ☆94Updated last month
• Liuxg16 / GeoPPI
  ☆86Updated 3 years ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆72Updated last week
• SIAT-code / MASSA
  ☆22Updated 2 years ago
• BytedProtein / ByProt
  ☆202Updated 11 months ago
• Eikor / InstructPLM
  The first large protein language model trained follows structure instructions.
  ☆84Updated 4 months ago
• YAndrewL / CLAPE
  contrastive learning and pre-trained encoder for protein-ligand binding sites prediction
  ☆30Updated 2 months ago