Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"
☆62Nov 5, 2025Updated 11 months ago
Alternatives and similar repositories for data-repo_plm-finetune-eval
Users that are interested in data-repo_plm-finetune-eval are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- ☆15Mar 28, 2025Updated last year
- Pooling by PageRank Token Importance. This is a weighted average pooling method where the weights are derived from the internal attention…☆19Jun 11, 2025Updated last year
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆13Dec 10, 2024Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆147Sep 29, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Making Protein Language Modeling Accessible to All Biologists☆169Sep 29, 2026Updated last week
- Terminal viewer for pdb files☆22Jan 5, 2026Updated 9 months ago
- Library of models for Protein Function prediction (part of the 18th top solution out of 1625 teams in CAFA5)☆20May 23, 2025Updated last year
- Biological prediction models made simple.☆54Oct 2, 2026Updated last week
- Protein stability prediction using rewired protein generative models☆98Jul 15, 2026Updated 2 months ago
- Efficient implementatin of ESM family.☆88Sep 9, 2025Updated last year
- This is for the AI enzyme design course☆20Nov 10, 2025Updated 11 months ago
- ☆26May 19, 2024Updated 2 years ago
- Reference-free analysis of genetic architecture☆23Sep 21, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆34Jun 9, 2026Updated 4 months ago
- Pretrained METL models with minimal dependencies☆16Sep 16, 2026Updated 3 weeks ago
- Effect of tokenization on transformers for biological sequence☆23Dec 31, 2025Updated 9 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆26Mar 6, 2025Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆107Apr 24, 2024Updated 2 years ago
- ☆45Aug 29, 2025Updated last year
- Profluent-E1 family of Protein Encoder Models☆115Mar 11, 2026Updated 6 months ago
- ☆189Jul 24, 2026Updated 2 months ago
- LoRA for protein language models☆48Jan 24, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆136May 19, 2026Updated 4 months ago
- ☆16Aug 22, 2022Updated 4 years ago
- PLMFit platform for TL on PLMs☆22Aug 13, 2025Updated last year
- Reaction-Conditioned Virtual Screening of Enzymes☆50Jun 13, 2026Updated 3 months ago
- Contrastive learning harmonizing protein language models and natural language models☆44Jun 12, 2024Updated 2 years ago
- ☆38Feb 4, 2026Updated 8 months ago
- Efficient manipulation of protein structures in Python☆68Jun 16, 2026Updated 3 months ago
- Learning the language of protein-protein interactions☆156Jun 15, 2026Updated 3 months ago
- ProteinFeatureAnalyzer extracts, analyzes and visualizes features from protein structures.☆14Mar 14, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆15Dec 21, 2021Updated 4 years ago
- Unleash MMseqs2’s power for your protein and nucleotide sequence analysis. Fast, simple, seamless!☆47Aug 11, 2026Updated last month
- ☆17May 18, 2026Updated 4 months ago
- ☆40Sep 17, 2024Updated 2 years ago
- Integrative protein sequence design with evolutionary multiobjective optimization.☆13Jul 16, 2024Updated 2 years ago
- A deep learning framework (CreoPep) for target-specific design and optimization of conotoxin peptides☆17Mar 28, 2026Updated 6 months ago
- ☆19Dec 10, 2022Updated 3 years ago