Alternatives and similar repositories for data-repo_plm-finetune-eval

Users that are interested in data-repo_plm-finetune-eval are comparing it to the libraries listed below

• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆62Updated 5 months ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆63Updated last year
• varun-shanker / structural-evolution
  ☆109Updated last year
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆66Updated 3 years ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆114Updated 4 months ago
• zhanghaicang / carbonmatrix_public
  ☆115Updated last month
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆72Updated 6 months ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆105Updated 4 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆78Updated last year
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆82Updated 11 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆58Updated 5 months ago
• Kuhlman-Lab / evopro
  ☆81Updated last month
• ai4protein / ProSST
  🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)
  ☆129Updated last month
• liuyf020419 / SCUBA-D
  ☆60Updated last year
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆40Updated 7 months ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆99Updated 2 months ago
• chandar-lab / AMPLIFY
  ☆104Updated last month
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆99Updated last month
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆59Updated last year
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆80Updated last month
• jeffreyruffolo / AntiBERTy
  Antibody-specific masked language model
  ☆57Updated 2 years ago
• westlake-repl / SaprotHub
  Making Protein Modeling Accessible to All Biologists
  ☆114Updated this week
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆152Updated last year
• westlake-repl / ProTrek
  ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
  ☆113Updated this week
• ikalvet / heme_binder_diffusion
  ☆133Updated 9 months ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆59Updated 2 years ago
• ai4protein / VenusFactory
  🏭 Easy data acquisition, benchmark resources, PLM fine-tuning for bio-researchers. (ACL Demo 2025)
  ☆97Updated this week
• HySonLab / Directed_Evolution
  Protein Design by Machine Learning guided Directed Evolution
  ☆43Updated 3 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆146Updated 5 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆69Updated 3 weeks ago