Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"
☆56Nov 5, 2025Updated 4 months ago
Alternatives and similar repositories for data-repo_plm-finetune-eval
Users that are interested in data-repo_plm-finetune-eval are comparing it to the libraries listed below
Sorting:
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆12Dec 10, 2024Updated last year
- structural antibody parser and database☆17Feb 26, 2026Updated 3 weeks ago
- ☆15Mar 28, 2025Updated 11 months ago
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 6 months ago
- Reference-free analysis of genetic architecture☆22Sep 21, 2024Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆93Apr 24, 2024Updated last year
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- Effect of tokenization on transformers for biological sequence☆22Dec 31, 2025Updated 2 months ago
- ProteinFeatureAnalyzer extracts, analyzes and visualizes features from protein structures.☆14Mar 14, 2020Updated 6 years ago
- Protein language model trained on coding DNA☆53Oct 20, 2024Updated last year
- Integrative protein sequence design with evolutionary multiobjective optimization.☆12Jul 16, 2024Updated last year
- Making Protein Language Modeling Accessible to All Biologists☆158Updated this week
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated last week
- ☆123Feb 20, 2026Updated last month
- Contrastive learning harmonizing protein language models and natural language models☆40Jun 12, 2024Updated last year
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆267Apr 27, 2025Updated 10 months ago
- Efficient implementatin of ESM family.☆81Sep 9, 2025Updated 6 months ago
- ☆26May 19, 2024Updated last year
- ☆11Mar 11, 2025Updated last year
- This is for the AI enzyme design course☆14Nov 10, 2025Updated 4 months ago
- DeepSoluE☆14Sep 18, 2023Updated 2 years ago
- Biomedical data, from lab to paper.☆18Feb 17, 2026Updated last month
- Simple python interface for the OpenProtein.AI REST API.☆15Updated this week
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆123Feb 7, 2026Updated last month
- Biological prediction models made simple.☆49Jan 13, 2026Updated 2 months ago
- Predicting the effect of mutations on protein stability using a simple orientational potential.☆19Jul 5, 2024Updated last year
- ☆86Sep 20, 2023Updated 2 years ago
- ☆16Feb 14, 2025Updated last year
- Library of models for Protein Function prediction (part of the 18th top solution out of 1625 teams in CAFA5)☆20May 23, 2025Updated 9 months ago
- ☆33Oct 14, 2024Updated last year
- ☆17Dec 9, 2024Updated last year
- ☆13Sep 29, 2023Updated 2 years ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Jun 26, 2023Updated 2 years ago
- Bilingual Language Model for Protein Sequence and Structure☆303Mar 6, 2026Updated 2 weeks ago
- ☆31Nov 23, 2025Updated 3 months ago
- ☆19Mar 16, 2025Updated last year
- The purpose of Raster Fairy is to transform any kind of 2D point cloud into a regular raster whilst trying to preserve the neighborhood r…☆13Apr 18, 2017Updated 8 years ago
- ☆21Oct 22, 2024Updated last year