RSchmirler / data-repo_plm-finetune-eval
Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"
☆22Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for data-repo_plm-finetune-eval
- ☆21Updated 4 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆36Updated 5 months ago
- Fitness landscapes for antibodies☆51Updated 7 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆42Updated 3 months ago
- ☆42Updated 7 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆33Updated 2 months ago
- An antibody-specific language model focusing on NGL prediction☆21Updated 3 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆62Updated 4 months ago
- ☆70Updated 6 months ago
- Code for humanization of antibody and nanobody☆23Updated 3 weeks ago
- ☆23Updated 3 weeks ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆51Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆26Updated 3 weeks ago
- Structure-conditioned masked language modeling for protein sequence design☆60Updated 9 months ago
- AlphaFold-initiated replica exchange protein docking☆45Updated 3 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆82Updated 2 weeks ago
- ☆20Updated last month
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 3 weeks ago
- Structure-Informed Protein Language Model☆26Updated 9 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆70Updated 4 months ago
- ☆38Updated 2 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆41Updated 5 months ago
- Aligning protein generative models with experimental fitness☆71Updated last month
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆25Updated 5 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆23Updated 3 months ago
- SaprotHub: Making Protein Modeling Accessible to All Biologists☆69Updated this week
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆37Updated 6 months ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆40Updated 2 months ago
- AlphaBind code + model accompanying pre-print☆25Updated this week