fredjarlier / mpiBWA
Scalable mpi aligner base on BWA
☆7Updated 4 years ago
Related projects: ⓘ
- Graphite - Graph-based variant adjudication☆28Updated 3 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 5 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- ☆13Updated last year
- A long-read analysis toolbox for cancer and population genomics☆19Updated 6 months ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated last year
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 5 months ago
- PopSTR - A Population based microsatellite genotyper☆31Updated 10 months ago
- Stupid Simple Structural Variant View☆25Updated 7 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆10Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆28Updated last year
- ☆28Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆52Updated last year
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Tumour-only somatic mutation calling using long reads☆22Updated 6 months ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Updated 8 years ago
- Integrated Variant Caller☆17Updated 6 years ago
- VCF files of SVs using long-read sequencing (LRS).☆21Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆16Updated 4 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- ☆13Updated last year
- Scaffolding genomes using synthetic long read clouds☆20Updated 7 years ago