fredjarlier / mpiBWA
Scalable mpi aligner base on BWA
☆7Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for mpiBWA
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 3 weeks ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- Graphite - Graph-based variant adjudication☆28Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆20Updated 8 months ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 7 years ago
- ☆29Updated 2 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- ☆13Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 5 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆29Updated last year
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆16Updated 6 years ago
- Tumour-only somatic mutation calling using long reads☆24Updated 3 weeks ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 3 years ago