Alternatives and similar repositories for mpiBWA:

Users that are interested in mpiBWA are comparing it to the libraries listed below

• vibansal / hapcut
  program for haplotype phasing from sequence reads and related tools
  ☆25Updated 6 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• benedictpaten / marginPhase
  ☆34Updated 4 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 4 years ago
• walaj / svlib
  Toolkit for extracting SVs from long sequences and benchmarking variant callers
  ☆13Updated 8 years ago
• ptrebert / project-diploid-assembly
  Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
  ☆15Updated 9 months ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆21Updated 10 months ago
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆32Updated last year
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆30Updated last year
• HongzheGuo / deBGA
  de Bruijn Graph-based read aligner
  ☆33Updated 6 years ago
• lh3 / rtgeval
  Wrapper for RTG's vcfeval; DEPRECATED!
  ☆21Updated 8 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 2 months ago
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 2 years ago
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆56Updated 2 years ago
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated this week
• jts / mbtools
  ☆13Updated last year
• jeremymcrae / clinical-filter
  filtering trio-based genetic variants in VCFs for clinical review
  ☆21Updated 4 years ago
• ryanlayer / svv
  Stupid Simple Structural Variant View
  ☆25Updated 8 years ago
• mcfrith / dnarrange
  ☆16Updated this week
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆54Updated last year
• TavorB / spectral_jaccard_similarity
  ☆14Updated 2 years ago
• ZuchnerLab / Maverick
  A Mendelian approach to variant effect prediction built in keras
  ☆16Updated 3 months ago
• AlgoLab / malva
  genotyping by Mapping-free ALternate-allele detection of known VAriants
  ☆10Updated last year
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆21Updated 3 years ago
• BilkentCompGen / hercules
  Profile HMM-based hybrid error correction algorithm for long reads
  ☆20Updated 6 years ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆33Updated 7 years ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 4 months ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆25Updated 2 months ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆25Updated 7 months ago