sggao / cellsnap
CellSNAP: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
☆13Updated last month
Related projects ⓘ
Alternatives and complementary repositories for cellsnap
- Interoperability between SpatialData and the Xenium Explorer☆15Updated 3 months ago
- ☆33Updated 7 months ago
- Spatial direct messaging detected by bivariate Moran☆24Updated this week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆23Updated last month
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆28Updated 10 months ago
- ☆37Updated 3 weeks ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆21Updated last year
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆15Updated 11 months ago
- CAST package☆23Updated 2 weeks ago
- ☆13Updated 5 years ago
- Join subcellular Visium HD bins into cells☆52Updated last week
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆51Updated last week
- CeLEry: cell location recovery in single-cell RNA sequencing☆31Updated 6 months ago
- ☆23Updated last month
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆68Updated 11 months ago
- Analyzing cellular niches in spatial transcriptomics data☆27Updated 5 months ago
- Test genes for Spatial Variation☆12Updated last year
- ☆12Updated 2 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆23Updated 8 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆49Updated 5 months ago
- ☆31Updated last month
- Code used to benchmark Xenium☆40Updated 4 months ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated this week
- ☆16Updated last year
- ☆32Updated this week
- ☆15Updated this week
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆35Updated 3 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆55Updated last year
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆24Updated last month
- data for spacejam2☆17Updated 2 years ago