yuqiyuqitan / SPACEcLinks
☆35Updated last week
Alternatives and similar repositories for SPACEc
Users that are interested in SPACEc are comparing it to the libraries listed below
Sorting:
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆119Updated this week
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆35Updated last year
- Spatial Single-Cell Analysis Toolkit☆91Updated 2 weeks ago
- Join subcellular Visium HD bins into cells☆100Updated 2 weeks ago
- Single-cell spatial proteomics analysis that makes you happy!☆28Updated this week
- Identification of persistent local patterns in spatial omics data☆10Updated 3 weeks ago
- Code used to benchmark Xenium☆58Updated 11 months ago
- ☆48Updated last week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆80Updated last year
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆47Updated 2 weeks ago
- ☆49Updated 5 months ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 2 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆66Updated last month
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆58Updated 6 months ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆47Updated 3 years ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆65Updated this week
- ☆35Updated 2 weeks ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆42Updated 10 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆197Updated this week
- Interoperability between SpatialData and the Xenium Explorer☆23Updated 10 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆62Updated 2 weeks ago
- ☆52Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆128Updated 3 months ago
- Central repository for the Multiplexed Tissue Imaging Workshop 2023.☆10Updated 2 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆79Updated 2 months ago
- ☆38Updated last month
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 2 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆18Updated last month
- Python package for reading imaging mass cytometry (IMC) files☆15Updated this week
- Bayesian Analytics for Spatial Segmentation☆28Updated 3 weeks ago