☆67May 31, 2026Updated last month
Alternatives and similar repositories for SPACEc
Users that are interested in SPACEc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate a spatial catalogue from multiplexed imaging data☆19Jun 12, 2025Updated last year
- ☆43Jun 3, 2026Updated last month
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆24Jan 9, 2026Updated 6 months ago
- ☆232Feb 4, 2026Updated 5 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆289Jul 15, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Single-cell spatial omics analysis that makes you happy!☆71Jul 20, 2026Updated last week
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆16May 26, 2025Updated last year
- Official repository for Characterization of tumor heterogeneity through segmentation-free representation learning on multiplexed imaging …☆16Jul 17, 2026Updated last week
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆68Mar 14, 2024Updated 2 years ago
- ☆20Sep 19, 2025Updated 10 months ago
- End-to-end analysis of spatial multi-omics data☆119May 15, 2026Updated 2 months ago
- Highly accurate prediction of single-cell spatial transcriptomics from histology images☆24May 31, 2026Updated last month
- An AnnData-based framework for integrated proteomics analysis☆28Jul 8, 2026Updated 3 weeks ago
- Identification of persistent local patterns in spatial omics data☆18May 6, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆57May 20, 2022Updated 4 years ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆208Jun 26, 2026Updated last month
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆35Jul 24, 2025Updated last year
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆75Nov 4, 2024Updated last year
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- ☆100Jul 2, 2026Updated 3 weeks ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆181Jul 15, 2026Updated 2 weeks ago
- Static plotting for spatialdata☆82Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Jun 27, 2024Updated 2 years ago
- ☆44May 11, 2026Updated 2 months ago
- ☆36Oct 10, 2025Updated 9 months ago
- UniFORM: Towards Universal ImmunoFluorescence Normalization for Multiplex Tissue Imaging☆18Jul 30, 2025Updated 11 months ago
- Learning notes for DBiT-Notes☆11Nov 28, 2024Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆182Updated this week
- Differential spatial enrichment across conditions☆28Jul 14, 2026Updated 2 weeks ago
- Foundation Model for Multiplex Spatial Proteomic Images☆206Updated this week
- R based workflow for multiplexed imaging data☆39Mar 20, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated 2 months ago
- ☆15Nov 2, 2021Updated 4 years ago
- Read/write functions to and from spatialdata for Deep Visual Proteomics☆17Updated this week
- Cytometry by time-of-flight(CyTOF) data is very useful in studying the presence/absence of antigens/surface markers at single cell level.…☆15Jun 1, 2020Updated 6 years ago
- An open and interoperable data framework for spatial omics data☆383Updated this week
- Spatial Single-Cell Analysis Toolkit☆113Mar 11, 2026Updated 4 months ago
- Integrated pipeline for multiplexed image analysis☆107Jan 7, 2026Updated 6 months ago