yuqiyuqitan / SPACEcLinks
☆59Updated last month
Alternatives and similar repositories for SPACEc
Users that are interested in SPACEc are comparing it to the libraries listed below
Sorting:
- Spatial Single-Cell Analysis Toolkit☆108Updated 3 weeks ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆148Updated last month
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆149Updated 2 weeks ago
- Single-cell spatial proteomics analysis that makes you happy!☆51Updated this week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆95Updated 2 years ago
- Join subcellular Visium HD bins into cells☆132Updated 3 months ago
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆110Updated 7 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆66Updated 7 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆39Updated last year
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆71Updated last year
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆83Updated 2 weeks ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆261Updated 3 weeks ago
- List of Spatial Transcriptomics related Tools organized per category☆102Updated last week
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆70Updated 2 months ago
- ☆44Updated 3 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- ☆52Updated 3 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆72Updated 2 months ago
- ☆59Updated 3 weeks ago
- ☆45Updated 9 months ago
- Code used to benchmark Xenium☆73Updated last year
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Updated 2 months ago
- ☆65Updated this week
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 11 months ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆201Updated last year
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆54Updated 3 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Updated 4 years ago
- BANKSY: spatial clustering☆134Updated 3 months ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆52Updated 3 years ago
- ☆41Updated last week