yuqiyuqitan / SPACEcLinks
☆51Updated 5 months ago
Alternatives and similar repositories for SPACEc
Users that are interested in SPACEc are comparing it to the libraries listed below
Sorting:
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆144Updated last week
- Probabilistic cell segmentation for in situ spatial transcriptomics☆142Updated last week
- Spatial Single-Cell Analysis Toolkit☆104Updated 5 months ago
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆108Updated 5 months ago
- ☆56Updated last year
- Single-cell spatial proteomics analysis that makes you happy!☆45Updated last week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆91Updated last year
- Join subcellular Visium HD bins into cells☆128Updated last month
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 5 months ago
- ☆50Updated last month
- ☆45Updated 7 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆246Updated 2 weeks ago
- ☆41Updated last month
- ☆62Updated last week
- Code used to benchmark Xenium☆71Updated last year
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆69Updated 3 weeks ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆38Updated last year
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆80Updated 3 weeks ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 3 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆66Updated 5 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆47Updated 3 weeks ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆136Updated 9 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆70Updated last year
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 3 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated 2 weeks ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 9 months ago
- ☆39Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆180Updated last year